UFO02014.5prime Sequence
700 bp (700 high quality bases) assembled on 2008-12-15
> UFO02014.5prime
CTACTACGATTCCGCCAGTTTCGTCAAGGAAGGTCTGGGCAAGCTGGTAA
TCGATGAACTGGAACCGGCTCTGCAATTCTGCGACTATCTGGTCTACGGC
TATGCCGGAATCGAGCGCGATTCGCACAAGGCGGTGAGTCTGAACCAGCA
GTTGGATTTGGATTTGGGCAAGGGACTTTACCGCACGGTGACCCGCTTGA
AGCGCAAGTATCCCAATGTCAAGATCCTGCTGAGTGTGGGTGGTGACAAG
GACATTGAGCTGGACAAGGATGCCAAGGAGCTGCCCAACAAGTATCTCGA
ACTGCTCGAGAGCCCCACAGGTCGCACTCGTTTCGTGAATACCGTCTACT
CGCTGGTAAAGACCTACGGATTCGATGGCTTGGATGTCGCCTGGCAGTTC
CCCAAGAATAAGCCGAAGAAGGTGCACAGTGGAATTGGCAGCCTGTGGAA
GGGCTTCAAGAAGGTCTTCTCCGGCGACTCGATCGTCGATGAGAAGTCCG
AGGAGCACAAGGAGCAGTTCACCGCTCTACTCCGTGATGTTAAGAACGCC
TTCCGTCCGGACAACCTGCTGCTCTCCACCACTGTTCTGCCCAATGTGAA
CTCATCCCTGTTCTACGACATTCCCGCTGTGGTCAACTATTTAGACTTTG
TGAATCTGGGTACCTTCGATTTCTTTACACCCCAGCGTAATCCCGAAGTT
UFO02014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1811 | CG5210-RB | 438..1137 | 1..700 | 3500 | 100 | Plus |
| CG5210-RA | 1541 | CG5210-RA | 168..867 | 1..700 | 3500 | 100 | Plus |
| Idgf4-RC | 1807 | CG1780-RC | 462..742 | 348..628 | 510 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16692346..16692923 | 31..608 | 2890 | 100 | Plus |
| X | 23542271 | X | 9929222..9929432 | 558..348 | 485 | 82 | Minus |
| 2R | 25286936 | 2R | 16692986..16693077 | 609..700 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 16449489..16449566 | 354..431 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:25 has no hits.
UFO02014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:26 Download gff for
UFO02014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-RA | 171..870 | 1..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:35 Download gff for
UFO02014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 168..867 | 1..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:05 Download gff for
UFO02014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 168..867 | 1..700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:05 Download gff for
UFO02014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16691868..16691899 | 1..32 | 100 | -> | Plus |
| 2R | 16692348..16692923 | 33..608 | 100 | -> | Plus |
| 2R | 16692986..16693077 | 609..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:35 Download gff for
UFO02014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12579373..12579404 | 1..32 | 100 | -> | Plus |
| arm_2R | 12579853..12580428 | 33..608 | 100 | -> | Plus |
| arm_2R | 12580491..12580582 | 609..700 | 100 | | Plus |
