UFO02015.5prime Sequence
1110 bp (1014 high quality bases) assembled on 2008-12-15
> UFO02015.5prime
CAGTCGACATGCCGTGCTGGTATTACGACAAAAAGGAGCTGCGGGAGACG
CCCTCGATCTTGGATGGAATAAGCTTCGAAACGGAGCGGCGGTACAGAAA
AGAAGGTGCTCGATTTATTATGGAATGTGGCACCAAAATGGGCTTGGGCC
ACAACACGATGGCCACCGGCGTTGTATATTTTCACCGATTTTACATGTTT
CATTCGTTCCGGAGTTTCCCCCGGTACGTGACTGCGTGCTGCTGCCTGTT
CTTTGCTGGCAAGGTGGAGGAGACGCCAAAGAAGTGTCGCGACATTATTA
AAACTGCGCGTGGCATCCTTACCGACAATTACTTCTACTCGTTTGGCGAC
GACCCTAAGGAGGAGGTGATGACGCTAGAGCGTATTCTGCTGCAGACCAT
CAAATTCGATTTGCAAGTAGAGCATCCTTACACCTTTCTCCTAAAGTACG
CTAAGTGTTTCAAAGGCGACCAGCAGAAGCTGCAAAAGATGGTGCAAATG
GCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTTTGTCTACAGTG
GGAGCCGGAGATTATCGCCGTGGCTCTTATCCATTTGGCCAGCAAGCTAA
GCAAATTCACTGTGCAAGACTGGGAGGGCCGCCAGCCACAGCAGCAGCGT
TGGTGGGATATGTTTGTGTCTGATGTAACGATGGAAATACTCGAAGACAT
CTGCCACCAAGTTCTGGACCTGTACCAATCAACCCAAAAAGAAGCGCTCC
AGCCAACCAGTCCGCCCCAAAAGCCACCAAGCAGAGCCGACAGTCCAAAA
TCCGGCAAGCTTACAATTCTACGGGTATTGGACCACTTTCCGTTCCACAA
CAGCCGCCGCCCCCCGTATGTGGCAACGGTGGCGTGCTGGAAGTTAGCAA
CATTCAGAGCATTAAATCCCTAGCCAGTGGCGTGCCAATCATTGGTCCTA
GGCGACTCCAGATCCTGTTACAGGCCCACACCAACAAGTCAGGCATCCGG
GTACACATTATCATGCTCTCAACGCGCCGCGTAGTGCTATGCGCGTACCT
CTTCGGATGGGATCAGCGACGTTCGACCTATAGCCGGGAGGTGCACACCC
ACAATGCGCT
UFO02015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycK-RC | 5858 | CG15218-RC | 420..1434 | 9..1018 | 4845 | 98.9 | Plus |
| CycK-RB | 1679 | CG15218-RB | 220..1234 | 9..1018 | 4845 | 98.9 | Plus |
| CycK-RA | 1879 | CG15218-RA | 420..1434 | 9..1018 | 4845 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22128725..22129723 | 1004..9 | 4715 | 98.6 | Minus |
| 2L | 23513712 | 2L | 22131022..22131126 | 255..151 | 345 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:58 has no hits.
UFO02015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:24 Download gff for
UFO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycK-RB | 188..1219 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:05 Download gff for
UFO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycK-RA | 415..1446 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:10 Download gff for
UFO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycK-RA | 415..1446 | 1..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:10 Download gff for
UFO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22128780..22129727 | 1..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:05 Download gff for
UFO02015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22128780..22129727 | 1..951 | 99 | | Minus |
