Clone UFO02016 Report

Search the DGRC for UFO02016

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:20
Well:16
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5537-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02016.5prime Sequence

402 bp (14 high quality bases) assembled on 2008-12-15

> UFO02016.5prime
CAATCCACATGCGCAGCGGCTCGCCCAGCGGCTGCGGCTCCCAGACGGAA
GAGGGCATCGATTGCTCTTATCACCATCAACCGCAACGGGAACCCCAGGA
ATTGGACCAACAGCTGCACACTCCCACGCATGCTCATGCCGCGGTGCCAA
CTGCCACATCGGAGGAAATCCTGGCGGAGTACGGCGTCCCCTTGATTCTA
CTCGAGTGCAATTCCCACGTGGCCCAACTGCTGACAATATTGCGCGACAA
GAACACCCCGCGCAGTGACTTCAAGTTCTATGCCGACCGTCTCATCCGGC
TGGTCATCGAGGAGTCGCTCAACCAGCTGCCCTACACCCATTGCGATGTG
GAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGCTCCGGCAA
CT

UFO02016.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..500 8..402 1450 91.1 Plus
CG5537-RB 1045 CG5537-RB 106..500 8..402 1450 91.1 Plus
CG5537-RA 1106 CG5537-RA 106..500 8..402 1450 91.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811537 251..402 730 98.7 Plus
3L 28110227 3L 5811078..5811321 8..251 725 86.5 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:57 has no hits.

UFO02016.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:22 Download gff for UFO02016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 106..500 8..402 91   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:24 Download gff for UFO02016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 106..500 8..402 91   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:22 Download gff for UFO02016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 106..500 8..402 91   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:22 Download gff for UFO02016.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5811386..5811537 251..402 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:24 Download gff for UFO02016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804486..5804637 251..402 98   Plus