UFO02019.5prime Sequence
1083 bp (856 high quality bases) assembled on 2008-12-15
> UFO02019.5prime
CAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACAGCGTCGTG
GGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAGCGCAGGGC
CAAGCAGCGGGCGATGCGACAGGAGCGTAAACGAAAACCGGACAAACCAG
ACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGACGCCCCAA
CAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGACTACCTGCG
CAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGTGGAGTACA
CCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGCAGATTATT
CTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGCAGTCGACA
AGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACAATGTGAACA
TGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGGCAAACCAT
CCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCCAGCCGATC
CTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGTTTACCGAC
TGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACCGCGACCTT
ATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCCGGATCGAC
GACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACATGGAGTTTCC
AGATGGCGGCGAGGAAGCGTGTCCCACTTTCGCAACCATCCACCCCCTTA
GTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTTTGCTTCAAC
AGGAGTTTAAAGAGATCGCCGCCCTCTCGCTGAACGGATACATTCACATC
TTCATGCGAGACCTTCAAGCAGACACTCTCACGAAAGCTGCCAACTGCAG
GTACGACGTGAGCATCGACTACACAGCGACGTCTGTATGCCGGTGGATGC
CGTGCCTATACATCCTTTGACGGCCCGCACCCTTCAACATAAGAAAATCC
GTCTCGATAGATGACTGCGTATACAGGCAAACT
UFO02019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3313-RB | 1897 | CG3313-RB | 214..1298 | 9..1078 | 4710 | 96.6 | Plus |
| CG3313-RA | 1783 | CG3313-RA | 100..1184 | 9..1078 | 4710 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12015928..12016482 | 829..276 | 2665 | 99.1 | Minus |
| 3R | 32079331 | 3R | 12016552..12016818 | 275..9 | 1320 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12015681..12015869 | 1011..829 | 495 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:54 has no hits.
UFO02019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:20 Download gff for
UFO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 214..1251 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:49 Download gff for
UFO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 61..1098 | 9..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:13 Download gff for
UFO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3313-RA | 100..1137 | 9..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:13 Download gff for
UFO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12015928..12016482 | 276..829 | 99 | <- | Minus |
| 3R | 12016552..12016818 | 9..275 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:49 Download gff for
UFO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7841650..7842204 | 276..829 | 99 | <- | Minus |
| arm_3R | 7842274..7842540 | 9..275 | 99 | | Minus |
