UFO02020.5prime Sequence
1084 bp (986 high quality bases) assembled on 2008-12-15
> UFO02020.5prime
CAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGCTAATAATC
GGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTCTCGGACGA
CACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTTTAAGATCC
GCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCTGGGACACG
GCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTACCGCGGCAC
CCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATCCTTTGCGA
ACGTCCGCCGCTGGCTGGAGGAGGTCCAGAATAACTGCGATGTGGTTAAA
AAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAGGTGGTCAT
TACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGAGCTATTCG
AGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCTTGTCGATT
ACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAACGAGCAGCA
GAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAAGGGTGGGA
AGTGCTGCAGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGC
CGACATGTAGCCATCACAAACGCATGATGACCTGATCGCAGCGCATCAGC
ACTGTCGCTTGCGTATATATTTGCCATGTGAACGGGGCGAGAGTGTCATA
TGCCACGTTATCAACTGTACTCACCCAGGATGCTGAACGAAAAACTATTT
CATAACTTTAGGAATGGCAGTTACCGTAACCGCC
UFO02020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab35-RB | 2024 | CG9575-RB | 926..1528 | 9..611 | 3000 | 99.8 | Plus |
| Rab35-RD | 3348 | CG9575-RD | 926..1528 | 9..611 | 3000 | 99.8 | Plus |
| Rab35-RA | 2635 | CG9575-RA | 926..1528 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20157970..20158270 | 360..60 | 1490 | 99.7 | Minus |
| X | 23542271 | X | 20157586..20157838 | 611..359 | 1265 | 100 | Minus |
| X | 23542271 | X | 20158895..20158947 | 61..9 | 265 | 100 | Minus |
| X | 23542271 | X | 12461504..12461623 | 284..165 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:33 has no hits.
UFO02020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:19 Download gff for
UFO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 883..1505 | 1..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:05 Download gff for
UFO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 917..1539 | 1..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:22 Download gff for
UFO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 917..1539 | 1..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:22 Download gff for
UFO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20157575..20157836 | 361..622 | 98 | <- | Minus |
| X | 20157970..20158269 | 61..360 | 99 | <- | Minus |
| X | 20158896..20158956 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:05 Download gff for
UFO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20051608..20051869 | 361..622 | 98 | <- | Minus |
| arm_X | 20052003..20052302 | 61..360 | 99 | <- | Minus |
| arm_X | 20052929..20052989 | 1..60 | 93 | | Minus |
