UFO02023.5prime Sequence
1116 bp (982 high quality bases) assembled on 2008-12-15
> UFO02023.5prime
CAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTAACAGCCCC
TCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACAAATCCACT
TGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGGAGCCACAA
ATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAGCCCCGGCC
ACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATCTCCGATGC
GCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCGCACCACAC
TGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGCACGAGGAG
TTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTATGCTGGCTA
CATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTCCCGAGAGA
AGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAGAGGAGTTC
AAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACCTTCAAGAA
GACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAGTCATCCCG
TCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACGACCAAGAT
CTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGCTTTGTCAA
GTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCACGGTTCGGG
ATGTAAATGACTTCTTTGAGAACGAGCTGCAGTTCCTTACCGAGTACCAC
GGCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACGCAACGCCA
CAAGGATGTAGGCGACTCGCATCAGAAGATTTCGAATGCGTTGACGCAGC
TCTCGACTACGGAAAAGGGAAATGTGAAGACGTTTGGGGCCAAGAAAGCG
GAAAATATTTGAAAGGATCAAGATCTGGAAACCCGAGTGCTAGCGATCAG
ATCTCAAGCTGGGCGAACCTCCTGCGCTACTATCAGCGGGAAGGGACGCT
GCAAAGCCTCTACTTATCGGCGACTGGCGTTTTGCTCGCTTGGAGCCGTC
ATCGAACTGGGAAGGC
UFO02023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx6-RB | 1821 | CG8282-RB | 114..1184 | 9..1076 | 5040 | 98.5 | Plus |
| Snx6-RA | 1803 | CG8282-RA | 114..1184 | 9..1076 | 5040 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8219362..8219806 | 972..527 | 2120 | 98.9 | Minus |
| 2L | 23513712 | 2L | 8220045..8220435 | 404..14 | 1955 | 100 | Minus |
| 2L | 23513712 | 2L | 8219870..8219991 | 526..405 | 610 | 100 | Minus |
| 2L | 23513712 | 2L | 8219200..8219297 | 1068..973 | 205 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:15 has no hits.
UFO02023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:31 Download gff for
UFO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx6-RA | 103..1189 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:49 Download gff for
UFO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx6-RA | 107..1193 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:49 Download gff for
UFO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx6-RA | 107..1193 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:49 Download gff for
UFO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8219362..8219806 | 527..972 | 98 | <- | Minus |
| 2L | 8219870..8219991 | 405..526 | 100 | <- | Minus |
| 2L | 8220045..8220439 | 8..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:49 Download gff for
UFO02023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8219362..8219806 | 527..972 | 98 | <- | Minus |
| arm_2L | 8219870..8219991 | 405..526 | 100 | <- | Minus |
| arm_2L | 8220045..8220439 | 8..404 | 99 | | Minus |
