UFO02024.5prime Sequence
1099 bp (980 high quality bases) assembled on 2008-12-15
> UFO02024.5prime
CAGTCGACATGGGTTGTGCCGTGAGTACAGCACGCGATAAGGAGGCCATC
GAGCGGTCGAAGAACATCGATCGCGCCCTGCGGGCGGAGGGCGAGCGGGC
CGCCTCGGAGGTGAAACTGCTGCTGCTGGGAGCCGGAGAGTCGGGCAAGT
CAACGATTGTGAAACAGATGAAGATCATCCATGACACGGGCTACTCGCAG
GAGGAATGCGAGGAGTATCGTCGCGTCGTCTTCAGCAACACGGTGCAGAG
TCTAATGGTGATCATCCGCGCAATGGGACGCCTGAAGATCGAGTTTGCCG
ATCCGAGCCGAACGGACATTGCCCGCCAGTTCTTCACACACGCCTCTGCC
GCCGACGAGGGCATCCTGCTGCCCGAGATCGTGCTCCTGATGAAGAAACT
CTGGGCAGACGGTGGCGTACAGCAGAGCTTCGCCCGATCGCGCGAATATC
AGTTGAATGACTCGGCGGGATACTATCTAAATTCGCTGGATAGGATCGCG
CAACCGAACTACATACCCACGCAGCAGGATGTGCTACGCACGCGGGTGAA
GACCACTGGCATCATCGAGACACACTTCTCCTGCAAGCAGCTGCACTTCA
AACTTTTCGATGTGGGTGGCCAGCGATCGGAGCGCAAAAAGTGGATTCAT
TGCTTCGAGGGCGTTACGGCCATAATCTTCTGCGTCGCGCTATCAGGTTA
CGATCTAGTATTGGCCGAGGACGAAGAGATGAATCGTATGATTGAGTCCC
TGAAGCTGTTCGATTCCATCTGCAACTCCAAGTGGTTTGTGGAAACATCC
ATAATACTGTTCCTCACAAGAAGGATCTGTTTGAGGAGAAGATCCAGAGA
TCTCCGCTGACGATATGCTTCCCAGAGTACAACAGGAACCCACACCTTCG
AGGGAGGCGGCCAACTACATCCGCATGAGTTCGAAAACCTGAACAAGCGA
AAGGACCAAAAGGAAGATATACACCGCATCTCCCTGCCCCACGGATACGA
ACACGGTGAGTTCGTCTTCGATGCCGTCACCGGATGTGATCATCAGGACC
ATCTGAAACAATTGGCCTATCCGCAAGCTTCTGACCATCGAGGCCCGCC
UFO02024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphai-RA | 2067 | CG10060-RA | 407..1469 | 9..1070 | 4915 | 98 | Plus |
| Galphao-RJ | 1785 | CG2204-RJ | 263..608 | 537..881 | 385 | 74.6 | Plus |
| Galphao-RI | 5457 | CG2204-RI | 920..1265 | 537..881 | 385 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6974002..6974474 | 601..129 | 2365 | 100 | Minus |
| 3L | 28110227 | 3L | 6973593..6973780 | 881..695 | 875 | 98.9 | Minus |
| 3L | 28110227 | 3L | 6979517..6979638 | 130..9 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 6973836..6973932 | 698..602 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 6973358..6973535 | 1061..884 | 390 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:53 has no hits.
UFO02024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:29 Download gff for
UFO02024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G-ialpha65A-RA | 410..1478 | 4..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:30 Download gff for
UFO02024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphai-RA | 401..1469 | 4..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:05 Download gff for
UFO02024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphai-RA | 401..1469 | 4..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:05 Download gff for
UFO02024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6973590..6973778 | 697..885 | 98 | <- | Minus |
| 3L | 6973838..6973932 | 602..696 | 100 | <- | Minus |
| 3L | 6974002..6974473 | 130..601 | 100 | <- | Minus |
| 3L | 6979518..6979644 | 4..129 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:30 Download gff for
UFO02024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6972618..6972744 | 4..129 | 98 | | Minus |
| arm_3L | 6966690..6966878 | 697..885 | 98 | <- | Minus |
| arm_3L | 6966938..6967032 | 602..696 | 100 | <- | Minus |
| arm_3L | 6967102..6967573 | 130..601 | 100 | <- | Minus |
