UFO02027.5prime Sequence
1138 bp (1029 high quality bases) assembled on 2008-12-15
> UFO02027.5prime
CAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGCTGAAGATC
GACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTACAAGGCCAC
GGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCGCCAATACA
TCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGGGCGTGATG
GACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAGAGGCTAAC
GGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTCCCATGTGG
AGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGGTGTGCTTC
GTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTATCTGTGGAA
GTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCTCAACAGCC
CTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCCTGGTCGAC
TACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTCCGATTCTT
CGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGATCTACTTTG
TGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTGATGTCTTG
AAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATGGCGCGGGT
CTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCCATCCGGCA
GTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACATTGTCAAC
GAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTGAGCATCAT
GTCGGGAATATCGCTTATCTACAGAATCGCTGTTGTGGCGGGTCCCAAGC
TCCGCCATCTCCTACTCCGAGCCCGTTCCCGTTTGGCTGAAAGCGAGGGA
GGTCGAACTGGTGCCAACAAGTGCACATCGGCGATTGCTCTGCCTCTATC
AGCTGGCAAGAACATCGATCCGCTCATCTACAGGAGGTGATCTCGGACTT
GTCCCCGGCGAATGGAGCGGCGATGAACATAGCGGCCCACAGCGTCCTTC
GACGCGCTAGCTTTCTAGAATCATTCCTGGGCCGGCCA
UFO02027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx2-RD | 5266 | CG4590-RD | 244..1343 | 9..1105 | 5145 | 98.4 | Plus |
| Inx2-RC | 1832 | CG4590-RC | 458..1557 | 9..1105 | 5145 | 98.4 | Plus |
| Inx2-RB | 2758 | CG4590-RB | 244..1343 | 9..1105 | 5145 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6999129..7000206 | 9..1084 | 4935 | 98.6 | Plus |
| X | 23542271 | X | 6974772..6974895 | 833..710 | 215 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:46 has no hits.
UFO02027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:09 Download gff for
UFO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx2-RB | 233..1343 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:55 Download gff for
UFO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx2-RB | 236..1346 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:01 Download gff for
UFO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx2-RB | 236..1346 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:01 Download gff for
UFO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6999121..7000231 | 1..1109 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:55 Download gff for
UFO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6893154..6894264 | 1..1109 | 97 | | Plus |
