UFO02028.5prime Sequence
1096 bp (961 high quality bases) assembled on 2008-12-15
> UFO02028.5prime
CAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGAACGCGATC
TGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCACCAAAGAT
CGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGGACAGCGTA
AGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCGGCGCCTTC
CCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCACCAGGAAA
TGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGACAAGGGAA
AGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGGACAAGATT
GTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTGGCCGAAGA
TGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGAGACGACGG
AGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGATCACCTCA
GCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAGTACATTCG
GTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGCCAAGCAGC
GTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGCCGCCCAAG
TTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCGCCGGCACC
TGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCAAAAGGAGT
GGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAGTTACACCA
TTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTGCAGCAGTGC
ACATCAACGAGAAGTTCGCCAAGATGGCCGAGCGCTGTACATAGCCGATC
GCAGGCGCGCGATTCGGTGGAGGCACGCTCCTAGCTGGTAAAGAGCTGGC
CCAAAAGAAAGATAGAAGAGATATGCTGCGTATGATGCGCACGGCTCGCG
AAGAGCGAGCGGACTACGCAATCGGAGCAGCCGAGCCATCTGGTCGGACT
ACTGATCGAGGGTGCGTGACGCAACGACTGCGCCGACGCATGGAGC
UFO02028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx42-RB | 2403 | CG8264-RB | 158..1250 | 9..1079 | 4795 | 97.2 | Plus |
| Bx42-RA | 1955 | CG8264-RA | 158..1250 | 9..1079 | 4795 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9105397..9105959 | 792..230 | 2815 | 100 | Minus |
| X | 23542271 | X | 9106223..9106447 | 233..9 | 1125 | 100 | Minus |
| X | 23542271 | X | 9105162..9105331 | 957..792 | 590 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:55 has no hits.
UFO02028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:53 Download gff for
UFO02028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx42-RA | 152..1225 | 2..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:19 Download gff for
UFO02028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx42-RA | 154..1227 | 2..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:35 Download gff for
UFO02028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx42-RA | 154..1227 | 2..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:35 Download gff for
UFO02028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9105397..9105957 | 232..792 | 100 | <- | Minus |
| X | 9106225..9106451 | 2..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:19 Download gff for
UFO02028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8999430..8999990 | 232..792 | 100 | <- | Minus |
| arm_X | 9000258..9000484 | 2..231 | 98 | | Minus |
