UFO02030.5prime Sequence
1071 bp (981 high quality bases) assembled on 2008-12-15
> UFO02030.5prime
CAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGACAGGGATAT
AATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCAAATAAAAC
GGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGGCGGTGGTT
ATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCAACGGTGGC
GGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTACGGAAATGG
AGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATACTCGGGCG
GCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTGGCAACGAC
ATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGATCCCTCGAC
CACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCATCATCAAGA
AAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGAACAAGGAG
ACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGACACCAATGC
TGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAACGGCAATG
CGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACAAGGGCGGA
GGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGACGTCGCGG
TGGTGGTGGCGGCGGAGGAGTGGCGGCGGCGGTGGAGGTCGCTTCGATCG
CGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAGGCGGTGGTG
GTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGACTGGAAATGC
AACAGCTGTAATAACACCAACTTTGCCTGCGCAACGAATGCAATAGATGT
AAGACTCCCAAGGCGACGACGAGGGCTCTAGCGAGTGTGAGCGCGCTACG
CGCGTGTGCGGAGAGCTACGACGAGAATGATCGTGGATCGGCGGCGTGAA
TCCAACAAAAATCCGTGCACTCGCAAGGAGCGAGCGCGCGCGTGTGTTGC
TACTCCGCTCAAGACACATGC
UFO02030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caz-RB | 1666 | CG3606-RB | 140..1069 | 7..933 | 4575 | 99.7 | Plus |
| caz-RC | 1621 | CG3606-RC | 235..1024 | 147..933 | 3875 | 99.6 | Plus |
| caz-RD | 1534 | CG3606-RD | 149..937 | 148..933 | 3870 | 99.6 | Plus |
| caz-RC | 1621 | CG3606-RC | 140..237 | 7..104 | 490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16292193..16292643 | 448..896 | 2155 | 99.6 | Plus |
| X | 23542271 | X | 16291939..16292110 | 278..449 | 860 | 100 | Plus |
| X | 23542271 | X | 16289027..16289160 | 16..149 | 670 | 100 | Plus |
| X | 23542271 | X | 16289225..16289322 | 147..244 | 490 | 100 | Plus |
| X | 23542271 | X | 16291056..16291092 | 244..280 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 622..728 | 412..524 | 119 | 59.3 | Plus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9139..9245 | 412..524 | 119 | 59.3 | Plus |
UFO02030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:50 Download gff for
UFO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caz-RB | 98..1033 | 1..933 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:47 Download gff for
UFO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caz-RB | 134..1069 | 1..933 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:56 Download gff for
UFO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caz-RB | 134..1069 | 1..933 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:56 Download gff for
UFO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16289027..16289158 | 16..147 | 100 | -> | Plus |
| X | 16289226..16289322 | 148..244 | 100 | -> | Plus |
| X | 16291057..16291091 | 245..279 | 100 | -> | Plus |
| X | 16291941..16292110 | 280..449 | 100 | -> | Plus |
| X | 16292195..16292643 | 450..896 | 99 | -> | Plus |
| X | 16292886..16292923 | 897..933 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:47 Download gff for
UFO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16183060..16183191 | 16..147 | 100 | -> | Plus |
| arm_X | 16183259..16183355 | 148..244 | 100 | -> | Plus |
| arm_X | 16185090..16185124 | 245..279 | 100 | -> | Plus |
| arm_X | 16185974..16186143 | 280..449 | 100 | -> | Plus |
| arm_X | 16186228..16186676 | 450..896 | 99 | -> | Plus |
| arm_X | 16186919..16186956 | 897..933 | 97 | == | Plus |
