UFO02031.5prime Sequence
1118 bp (1014 high quality bases) assembled on 2008-12-15
> UFO02031.5prime
CAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGCTGCGGCTA
CTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGCGGAGTGGA
GCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCGCCAGCCAC
CGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCATCTCGCAG
TCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTGTACAAAAA
CTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAACGACCCGT
GCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTAATGTTTCG
CAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGTGGCGGTGG
AGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTTCTCGCCCA
GAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCAGGGCCTTG
TTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGACGACATTGT
AGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGGACACCCGA
ACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAATTGCACTTG
GGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAGGCCACGGC
TTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCGCACGGTGA
ACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGAGAACGGCT
GCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAGCAGCGCGG
CTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCATTGAGGAAT
GCGCTCAACTACAGCTCTTGGGACTGGGTCATCGGCAGACTCCCAGTTCA
CGTGCAGAGACTGGAGGTGAGGCGATGAGCAGACATGAAACTGAACTAGC
GGTGAAGTGGAGCGGGATATGAGGGATCGGCATCAGCTGCGCAGAGCGAT
CAGCTCGTCCGGTGGGTGACTCCGCCTCAGGCAAGCCTACACGAGGAAAC
TGAACGAATACTGACCTT
UFO02031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44243-RB | 2010 | CG44243-RB | 441..1571 | 8..1112 | 4930 | 97.2 | Plus |
| CG44243-RA | 2131 | CG44243-RA | 739..1869 | 8..1112 | 4930 | 97.2 | Plus |
| CG42837-RA | 2131 | CG42837-RA | 739..1869 | 8..1112 | 4930 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16197780..16198338 | 8..566 | 2795 | 100 | Plus |
| 2R | 25286936 | 2R | 16198483..16198857 | 565..937 | 1775 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:14 has no hits.
UFO02031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:49 Download gff for
UFO02031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8446-RB | 239..1355 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:19 Download gff for
UFO02031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44243-RA | 735..1851 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:03 Download gff for
UFO02031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42837-RA | 735..1851 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:03 Download gff for
UFO02031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16197776..16198338 | 1..566 | 99 | -> | Plus |
| 2R | 16198485..16198946 | 567..1014 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:19 Download gff for
UFO02031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12085281..12085843 | 1..566 | 99 | -> | Plus |
| arm_2R | 12085990..12086451 | 567..1014 | 96 | -> | Plus |
