UFO02033.5prime Sequence
1114 bp (1021 high quality bases) assembled on 2008-12-15
> UFO02033.5prime
CAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATGTCGAGATC
TGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGCGGCAATGG
AACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAATCTCGCGCG
TCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACATCAAGTCG
CGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTACAGCACAG
ACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCATCTACTGCG
GCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACATAGACTTT
GAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGACAACAAGTT
CCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAAATTTGGAT
TCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTCAGGGCAAC
ACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAGAAGCACGG
TCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTATGGAGAAGC
GCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGCTCTTCATC
ACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGTAGTGCGGA
TTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCGTTTGCAAT
CAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAAACGGTTTT
AACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTTAAATTCAT
ACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTCTCAGGATA
CTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCACTGGACTTG
CTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGATATCAACGTTATGTT
CTCAGATCATGCCACTCGACGTCACGAAGTATTACATTGACGCCGGCAGA
AAGGACAGTCGCACTCACTGACAAGAAAAGCGGGGTAGAATGGAGCTGAT
GGATCTCAGCCGGC
UFO02033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eRF1-RI | 1873 | CG5605-RI | 211..1332 | 9..1112 | 5125 | 98.1 | Plus |
| eRF1-RH | 1806 | CG5605-RH | 211..1332 | 9..1112 | 5125 | 98.1 | Plus |
| eRF1-RG | 1739 | CG5605-RG | 185..1306 | 9..1112 | 5125 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20350557..20351028 | 269..740 | 2360 | 100 | Plus |
| 3L | 28110227 | 3L | 20350304..20350480 | 94..270 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 20351094..20351250 | 741..897 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 20349121..20349206 | 9..94 | 430 | 100 | Plus |
| 3L | 28110227 | 3L | 20351322..20351435 | 895..1004 | 375 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:34 has no hits.
UFO02033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:48 Download gff for
UFO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eRF1-RE | 441..1571 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:11 Download gff for
UFO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eRF1-RG | 247..1377 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:57 Download gff for
UFO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eRF1-RG | 177..1307 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:57 Download gff for
UFO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20349113..20349206 | 1..94 | 95 | -> | Plus |
| 3L | 20350305..20350480 | 95..270 | 100 | -> | Plus |
| 3L | 20350559..20351028 | 271..740 | 100 | -> | Plus |
| 3L | 20351094..20351249 | 741..896 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:11 Download gff for
UFO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20342213..20342306 | 1..94 | 95 | -> | Plus |
| arm_3L | 20343405..20343580 | 95..270 | 100 | -> | Plus |
| arm_3L | 20343659..20344128 | 271..740 | 100 | -> | Plus |
| arm_3L | 20344194..20344349 | 741..896 | 100 | -> | Plus |
