UFO02034.5prime Sequence
1126 bp (1008 high quality bases) assembled on 2008-12-15
> UFO02034.5prime
CAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTAAGCTCCAG
TTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTGCTTTTCTC
GCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAAATACTCGC
GGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGGCGGAGCAC
CATCATCATCATGATCATGACCACGATCATGGACACCACCACCACGGGCA
CGATCATGATCATGACCACGACCACGGGCATGATCATGGACACCATCATC
ACGGGCACGATCATGATCATGACCACGACCACGGACACCATCATCACGGG
CACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATGAGCACCAT
TTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGCTCCCTTCG
TGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGAAGCCGCGT
CTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGTGATGCCTT
TCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGGAGAACACG
GCCACGATCACGGCCATGATCACCATCATCATCATGATGGCGAGGAGCAT
GAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTCCTTGGAGG
AATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCTAAAGGGCG
GTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAAACCAGTGC
CTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGATGGAGAAAAA
CCGGCAAGCCAGCCAAGATCAAGTCCAAGAAACCAGAAGCGGAGCCAGGA
GGCGAAGTGGAGATTTCCGGCTACTTGAATTTGGCGGCGGACTTTGCTCA
CAACTCCACCGATGGCCTGGCCATCGGCGCCTCTATTTGGCGGGCAACAG
CATTGGCATGGTGACCACTATCACTATTCTGCTGCACGAGTGCCATGAAT
GGTGACTTGCATCTTATAAAGTCTGCTGTTCAGCGAAGCAATGCTTTCTG
CATGTACAAGGCCTCGGAGCCTGGCG
UFO02034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Catsup-RA | 1698 | CG10449-RA | 85..1193 | 9..1102 | 5085 | 98.1 | Plus |
| Catsup-RA | 1698 | CG10449-RA | 273..363 | 248..344 | 250 | 84.5 | Plus |
| Catsup-RA | 1698 | CG10449-RA | 324..420 | 197..287 | 250 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19042379..19043034 | 387..1039 | 3070 | 98.9 | Plus |
| 2L | 23513712 | 2L | 19041946..19042324 | 9..387 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 19042162..19042224 | 282..344 | 240 | 92.1 | Plus |
| 2L | 23513712 | 2L | 19042219..19042281 | 225..287 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:50 has no hits.
UFO02034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:16 Download gff for
UFO02034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Catsup-RA | 233..1336 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:20 Download gff for
UFO02034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Catsup-RA | 85..1188 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:21 Download gff for
UFO02034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Catsup-RA | 85..1188 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:21 Download gff for
UFO02034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19041946..19042324 | 9..387 | 100 | -> | Plus |
| 2L | 19042380..19043104 | 388..1096 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:20 Download gff for
UFO02034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19041946..19042324 | 9..387 | 100 | -> | Plus |
| arm_2L | 19042380..19043104 | 388..1096 | 97 | | Plus |
