UFO02035.5prime Sequence
1093 bp (1002 high quality bases) assembled on 2008-12-15
> UFO02035.5prime
CAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAGTTTCCTGG
GCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAATGCAAGGA
CATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGGCGTAAACG
TGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCCTCCACGAG
GTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGCCTGGAATT
CACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCTGACCACGG
ACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGTGGCGCGAT
GAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATGTTTGGAAA
TTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGACGATTTCA
ACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAAGTCTGTCC
CAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAGGAGAAGAA
GCCAGCTGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAAATATTTGCCCATGGTGAAACGGG
GCGAGAGTTGTCCATATTGCAACGTTTAAATCAAACTGTGAACTCACCCA
GGGATTGCTGAACGAAAACATATTCTCATATCCTTAGGAATAGCAGTTTT
CACGTACCCGCCAATCTGCCAATATGTGTAGACTGCGAAATCT
UFO02035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16817-RB | 809 | CG16817-RB | 144..695 | 9..560 | 2760 | 100 | Plus |
| CG16817-RA | 1120 | CG16817-RA | 144..695 | 9..560 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9678716..9678978 | 109..371 | 1300 | 99.6 | Plus |
| 3R | 32079331 | 3R | 9679042..9679233 | 369..560 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 9678561..9678648 | 25..112 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:30 has no hits.
UFO02035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:14 Download gff for
UFO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 136..691 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:42 Download gff for
UFO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 140..695 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:01 Download gff for
UFO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16817-RA | 140..695 | 1..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:01 Download gff for
UFO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9678562..9678648 | 26..112 | 100 | -> | Plus |
| 3R | 9678720..9678976 | 113..369 | 100 | -> | Plus |
| 3R | 9679043..9679233 | 370..560 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:42 Download gff for
UFO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5504284..5504370 | 26..112 | 100 | -> | Plus |
| arm_3R | 5504442..5504698 | 113..369 | 100 | -> | Plus |
| arm_3R | 5504765..5504955 | 370..560 | 100 | == | Plus |
