UFO02039.5prime Sequence
1103 bp (1016 high quality bases) assembled on 2008-12-15
> UFO02039.5prime
CAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGAATGATAAG
AGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACGGAGAAAGG
CGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCATGAGACCA
GCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCGGTGCCGGA
CTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCAGGAGCAAC
CATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGAGCGCATGC
TGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCGTGGACTTT
CTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGGCCACGCCC
ACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAATGTTCCTCT
GCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCATCACGGAA
AATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGCATGAGCAT
GGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCTGATGACCA
ACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGGCGCTGCTC
TTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGACCCATGCC
GTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTTGGCCCTGT
TCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCATCCTGCCG
CTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGGTTCGGAGT
GCTCAACTCCACGATGTTCTTTACCACGGCCCTGTTCATCTTCACCGGAT
TCGTGAGCTATGTGCGATGGGGCGAGGAGGTAGCCGGCAGCATACGCTAA
ATCTTGTATGCAGAGTTTTTCGCAGGTGGTGAAAGTGATCGCTGCTTTGG
GCGTTTCCTGGCTACCCATCAGTTCTTGGGATGATAGATTTGTGACCCCA
CTAGAGTCTATACTGATCAAGTATCCATACCTCGCAGTGCTCCGATCCTA
AGG
UFO02039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4991-RE | 2084 | CG4991-RE | 224..1281 | 5..1049 | 4925 | 98.4 | Plus |
| CG4991-RD | 2012 | CG4991-RD | 152..1209 | 5..1049 | 4925 | 98.4 | Plus |
| CG4991-RF | 2177 | CG4991-RF | 317..1374 | 5..1049 | 4925 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17102435..17103389 | 5..958 | 4710 | 99.8 | Plus |
| X | 23542271 | X | 17103507..17103549 | 964..1006 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:24 has no hits.
UFO02039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:41 Download gff for
UFO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-RC | 47..1082 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:41 Download gff for
UFO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-RF | 313..1348 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:48 Download gff for
UFO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4991-RF | 313..1348 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:48 Download gff for
UFO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17102431..17103389 | 1..958 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:41 Download gff for
UFO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16996464..16997422 | 1..958 | 99 | -> | Plus |
