UFO02040.5prime Sequence
1127 bp (1035 high quality bases) assembled on 2008-12-15
> UFO02040.5prime
CAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCTCCTCGTCG
ATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTCAACCCCTC
GCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGCCTGCGAGA
AGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGACTGGCGAAT
ATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCACACCAGATC
CGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGATGTGCTGG
TGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGTTTGTGGCC
GATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAAACGATGGC
CCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGTGGATGCGC
CTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACATGTCTCGC
ATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTTGGCGGAAA
TCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGCCTGTGATC
TGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCCTATGCGAT
CAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCACAGCAGCGA
GCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTCGCACCTGT
ACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTGTTGTAGAG
CACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAAGTAGCCAT
TTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCAGGGAGGCG
GCATTCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGTACAGCACAG
CGCGCAGCCCTCGAAGTCGATCTGCATACGTGCCATTAGCGGGCTATGGA
TACGGTCTGCCGATCTTCAAGCTTTACGCCCCGCTATTCCATGGCGACTG
TGCTGCTCTCCTGCAGATTCGGAACAGATGCATTCATCTATCTAGCTCTT
GTCGAACGAGAGCACGATGCTGCGATC
UFO02040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk-RC | 2732 | CG8808-RC | 810..1906 | 7..1094 | 5175 | 98.7 | Plus |
| Pdk-RD | 2440 | CG8808-RD | 810..1906 | 7..1094 | 5175 | 98.7 | Plus |
| Pdk-RB | 2293 | CG8808-RB | 810..1906 | 7..1094 | 5175 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9432490..9433061 | 532..1094 | 2365 | 96.7 | Plus |
| 2R | 25286936 | 2R | 9431970..9432180 | 132..342 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 9432235..9432425 | 341..531 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 9427248..9427375 | 7..134 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:13 has no hits.
UFO02040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:40 Download gff for
UFO02040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RB | 801..1914 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:33 Download gff for
UFO02040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RB | 804..1917 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:41 Download gff for
UFO02040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk-RB | 804..1917 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:41 Download gff for
UFO02040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9427242..9427373 | 1..132 | 97 | -> | Plus |
| 2R | 9431971..9432178 | 133..340 | 100 | -> | Plus |
| 2R | 9432235..9432425 | 341..531 | 100 | -> | Plus |
| 2R | 9432490..9433061 | 532..1094 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:33 Download gff for
UFO02040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5314747..5314878 | 1..132 | 97 | -> | Plus |
| arm_2R | 5319740..5319930 | 341..531 | 100 | -> | Plus |
| arm_2R | 5319476..5319683 | 133..340 | 100 | -> | Plus |
| arm_2R | 5319995..5320566 | 532..1094 | 97 | | Plus |
