UFO02041.5prime Sequence
1113 bp (1028 high quality bases) assembled on 2008-12-15
> UFO02041.5prime
CAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACGCGGACGTG
GGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAACGCCTGGC
GGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAAAATGAAGA
TCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCTTCCACAGC
GACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAACATTCAGTG
CAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGTAGGCGAGG
ACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGTACACGGGT
GCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGCGACATATG
CATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGAGGCAAGCG
GATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGCTGCTTAAG
TACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCACGGCGACGG
GGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGCTTCGTTCC
ACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGTACGAGATA
GGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTAAAGGAGGG
CATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAATTTCTGCCA
TTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTGGCGCGGAT
TCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACCAAGGGACA
TGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCACATTGGTGG
TCGGAGGCGTGGCTACACTTACGGACGTGCCCGCTGCTGGACGCACGAGA
CCTCGCTGCTGGTGACAGACATTGAAATGACTACCGCCACGAGTATTACG
ACTTTTCGCCCGACTTTAAACTCATCAGAGATACTCCCGCCAGATATGCT
AACTCAAGCAGTTCTTGACTCATCGTAGCATGGTTATGAACTAGATGTCA
ACTGCAGGTCCAT
UFO02041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdac3-RA | 1660 | CG2128-RA | 278..1384 | 9..1090 | 4890 | 97.4 | Plus |
| CG45100-RA | 1660 | CG45100-RA | 278..1384 | 9..1090 | 4890 | 97.4 | Plus |
| Rpd3-RA | 2124 | CG7471-RA | 615..806 | 420..611 | 270 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5473233..5473945 | 964..256 | 3365 | 99.4 | Minus |
| 3R | 32079331 | 3R | 5474165..5474323 | 167..9 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 5474015..5474103 | 255..167 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 4627863..4628054 | 420..611 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:49 has no hits.
UFO02041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:39 Download gff for
UFO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdac3-RA | 272..1374 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:01 Download gff for
UFO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdac3-RA | 274..1376 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:31 Download gff for
UFO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45100-RA | 274..1376 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:31 Download gff for
UFO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5473184..5473945 | 256..1006 | 98 | <- | Minus |
| 3R | 5474015..5474103 | 167..255 | 100 | <- | Minus |
| 3R | 5474166..5474327 | 1..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:01 Download gff for
UFO02041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1298906..1299667 | 256..1006 | 98 | <- | Minus |
| arm_3R | 1299737..1299825 | 167..255 | 100 | <- | Minus |
| arm_3R | 1299888..1300049 | 1..166 | 97 | | Minus |
