UFO02042.5prime Sequence
1122 bp (1017 high quality bases) assembled on 2008-12-15
> UFO02042.5prime
CAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCATTGGCGAC
CTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCCAAAATCAC
CAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGGCACGGGCG
AAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCAGCAACAAG
GAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTCATCGAGGC
CATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGCGCCCATTG
ATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTGGTGATGGC
GTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCAGCCACTGC
TGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGGCACCCGGA
AGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAGCAGGCGCG
GAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAGGGTCTGGC
TACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCCCACCTCCA
GCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAACTCCGATT
CAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATGCTCATGGT
GTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTACAAAAAGC
CGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGGAGAACGCC
CGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGCCAAATCAA
TCCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCAACACGCAGCGAA
ATACCCAAGCAGAGGCTTTGCGATTCATCGAGGAGCTCATTGAGCACGAG
ATGCCCTCTTCATGGAGCGAGACTTCATCACTTTCCCAGCAGCTGCGCGA
ATGTTTGGGCTGCGCGCGCCATGTGGCAATGCTGAGATTCTTCGAGCAGT
TCAGGAGGTGGAGTCACCAGTTGATGTGTGTCTGCGCATTCCGGAGGCGT
GACATATTGGCGCCGACTTCGC
UFO02042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7946-RB | 1884 | CG7946-RB | 124..1252 | 5..1122 | 5080 | 97.7 | Plus |
| CG7946-RA | 2042 | CG7946-RA | 282..1410 | 5..1122 | 5080 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30052795..30053464 | 5..674 | 3335 | 99.9 | Plus |
| 3R | 32079331 | 3R | 30053544..30053882 | 675..1010 | 1485 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:29 has no hits.
UFO02042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:37 Download gff for
UFO02042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1410 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:06 Download gff for
UFO02042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1410 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:04 Download gff for
UFO02042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7946-RA | 278..1410 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:04 Download gff for
UFO02042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30052791..30053464 | 1..674 | 99 | -> | Plus |
| 3R | 30053544..30054002 | 675..1122 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:06 Download gff for
UFO02042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25878513..25879186 | 1..674 | 99 | -> | Plus |
| arm_3R | 25879266..25879724 | 675..1122 | 94 | | Plus |
