UFO02045.5prime Sequence
1096 bp (1016 high quality bases) assembled on 2008-12-15
> UFO02045.5prime
CAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCTGTGCGCGG
CAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGCGGTCTCAG
TCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACTGATGACCG
ACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGTACCACAAG
ATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGCGGAGGATT
CTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGACGATCAGG
ATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACCTGTACGGC
AGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTCGACTGCTG
TACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTTCATGAACA
CCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGACCTGTTGAC
CGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACAAAACCGGT
TGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGATGAATTTC
AGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGTTTACGCAC
CTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGGCATCCAGA
GGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCCCTTCATTG
CGTTACTTCAGCGTCGCTGTAAGTGTCCCAGTTGGATTCTATTGACTACC
GACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAAGGCCAAACG
GATGCGGACGGCAGTATGAATCGCATGTTCAGATCCTGTGCGCCGAAGAA
AACGATATATCCGGCCGCGAACCCTGACTCATTTCGGAGAGATCTGACTT
CATCGCACGTGTGCCAGGTACTGGACAGCACCTTCTCGACTCTGTGATCG
CCTTTGCTGCAGTGATTTCTACGATTCGCATTCTTTCACACGTCCTCATC
GAATGTGCCAGCTGACCTGGATGGGAGGCAGATGCACGATTACCGC
UFO02045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8520-RB | 1734 | CG8520-RB | 150..1229 | 9..1067 | 4895 | 98.1 | Plus |
| CG8520-RA | 2134 | CG8520-RA | 550..1629 | 9..1067 | 4895 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12424166..12424768 | 408..1001 | 2605 | 98.2 | Plus |
| 2R | 25286936 | 2R | 12423710..12424108 | 9..407 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:11 has no hits.
UFO02045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:35 Download gff for
UFO02045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 487..1575 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:26 Download gff for
UFO02045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 541..1629 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:03 Download gff for
UFO02045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8520-RA | 541..1629 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:03 Download gff for
UFO02045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12423701..12424108 | 1..407 | 99 | -> | Plus |
| 2R | 12424166..12424768 | 408..1001 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:26 Download gff for
UFO02045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8311206..8311613 | 1..407 | 99 | -> | Plus |
| arm_2R | 8311671..8312273 | 408..1001 | 98 | -> | Plus |
