UFO02048.5prime Sequence
1117 bp (1004 high quality bases) assembled on 2008-12-15
> UFO02048.5prime
CAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTTCCCAATCA
GCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTGAACGCAGA
TGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCTGACTCCCT
CCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCCAGGTGCGT
TTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTGGGTCTGAA
GCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGCCGTCGCCA
TCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCAAGTTCCGT
CTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTACTACAAGAC
CAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCACTGCCTCCG
CCCTGGTTGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGATTGCTGAGACGAAAAACATATTTCTCAATAAACCCTTT
AGGGAAATAGGCCAAGGTTTTCCCCGGTAACACGCCACATCTGCGATATA
TGGTGTAGAACTGCGGAAATCGGTCTGCTATTCCCTCCGAGCGATGAAAA
CGTTCAGGTGCTCATGGAAAACGGTGTAACAGGGTGAACCTATCTTCACA
GCTCACGTCTTTCTATG
UFO02048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS13-RC | 899 | CG13389-RC | 100..552 | 9..461 | 2265 | 100 | Plus |
| RpS13-RB | 611 | CG13389-RB | 34..486 | 9..461 | 2265 | 100 | Plus |
| RpS13-RA | 633 | CG13389-RA | 47..499 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8363824..8364126 | 461..159 | 1515 | 100 | Minus |
| 2L | 23513712 | 2L | 8364187..8364316 | 160..31 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:15 has no hits.
UFO02048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:10:44 Download gff for
UFO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS13-RB | 23..494 | 1..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:05 Download gff for
UFO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS13-RA | 39..510 | 1..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:22 Download gff for
UFO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS13-RA | 39..510 | 1..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:22 Download gff for
UFO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8364188..8364315 | 32..159 | 100 | <- | Minus |
| 2L | 8363824..8364125 | 160..461 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:05 Download gff for
UFO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8363824..8364125 | 160..461 | 100 | <- | Minus |
| arm_2L | 8364188..8364315 | 32..159 | 100 | <- | Minus |
