UFO02049.5prime Sequence
1140 bp (1019 high quality bases) assembled on 2008-12-15
> UFO02049.5prime
CAGTCGACATGCATCCCGATCTCACGGAGCGCATTCTCCAGCATTTGGAG
ACCACCGACAAGGCGGACACACTGGACCTGGCCGCACTCTTTGCCGAGGA
TCACCAGAAGATTGTGGGCTCATTGAAGAGCATACAGGCGCATGGCGAAC
TAGTCACCGCGGAAACGGTCACCCACAAGAGTTTGGGCCTCACAGACGAG
GGTCGCGCCGTCGTGGAGAATGGCAGTCATGAGGCACTGGTCTACGACCT
AGTTCCGCCGGAGGGAATCGCCCAGGCGGCTCTAATGGCAGCCGGTGGCG
CAAATGCCAAAGTGGGCTTTAGCAAAGCCATGTCGCACGGCTGGATTTTG
GTGGACAAGAGCGTCACGCCGCCGCTGGTGCGCCGCAAGGTGGACACCAT
TACGGATGTGGTGCGCAATCAACTGCAGCAGGTGGCGCTGGGAAAGGGTG
ACCAGCTGCCTGCCAAGGAGGTGGCCGACTTCAAGAAACGCAAGCTCCTC
CAGGAAACGACCACCAAGAGCTTCGTGCTGGCACGCGGCCCTGAATTTGC
CACCACTCTCACCAAGTTGGAGACGGATCTCACGGTGGAAATGCTCGCAA
ATGGATTGTGGGACCAGCTCAAGTTCAAGGCCTATAACTTTGATGCGTTG
GGTGCACCACCAACGCGTGGACATCTCCATCCCTTGCTCAAAGTGCGCAC
TGAGTTCCGGCAGATATTCCTCGAGATGGGCTTCTCAGAGATGCCTACGA
ACAACTATGTGGAATCGTCATTCTGGAACTTCGATGCGCTCTATCAGCCG
CAACAGCATCCAGCTCGCGATGCCCACGACACCTTCTTCGTGAATCATCC
GGGCCAAAAGCCACAAGTTTCCGCAGACTATCTGGAGCGCGTGAAGAAGT
GCACTCTGTGGGTGGCTATGGATCGAAGGGTTACGGCTACGACTGGAAGC
TGGAGGAGCGCAGAAGATCTACTGCGCACGCATACGACGGCGTGGAGTGC
GAGGATGCTGTACAAGCTGGCAACAGAGGGCGCTTCAAGCAGCCAGTACT
TCAGCATCGACAGGTGTTCCGCACGAAACACTGACGCCAACATCTGGCGA
GTTCATCAGGGTGAGGCCGGAATGCCAAAGTGTGTGTCTG
UFO02049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2263-RA | 1699 | CG2263-RA | 108..1224 | 9..1110 | 5120 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8144480..8145495 | 1021..9 | 4790 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:50 has no hits.
UFO02049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:59 Download gff for
UFO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 102..1239 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:28 Download gff for
UFO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 103..1240 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:02 Download gff for
UFO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2263-RA | 103..1240 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:02 Download gff for
UFO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8144363..8145500 | 1..1125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:28 Download gff for
UFO02049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8038396..8039533 | 1..1125 | 97 | | Minus |
