UFO02050.5prime Sequence
1108 bp (1015 high quality bases) assembled on 2008-12-15
> UFO02050.5prime
CAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCATAAGTGCT
CTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTTTTGGAGCT
CAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTTGGTCATGT
TCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCATTTTTGCT
CTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGTCGCCTAGA
TTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCGTGGCTATC
CCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACAACGGAGAC
CGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCTGGGCCTCC
AGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAAGGGATCCC
ATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGGTGTGGGAT
ACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTTTTCTATGC
CACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAAACTGCCAG
CGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGCATGGGCAT
TTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTTTTCCAATG
GGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCGGTTCAACA
TCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTGTGGTACAG
GAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTTCGGGACAT
GGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGACAAATTCC
ATTTGGATGGATTGGCGAGCCATCAATAGCACATTCCATTATCTGGATCA
CTGCCCACGCCTCACTTGAAAGCGATTAATCGAGCACCCAACACACTTCA
TACCCGAAGATGATCCATGCAATGACTCCACAGCCTGCACCTTTTCCTAG
ATCATCCGCACGAGTGCATGCTATGGAGAAATCGTACTTGACGTGATCGG
CACTGTCA
UFO02050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5027-RA | 1862 | CG5027-RA | 202..1264 | 9..1060 | 5025 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16229699..16230314 | 286..901 | 3080 | 100 | Plus |
| 3L | 28110227 | 3L | 16229404..16229645 | 48..289 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 16230381..16230530 | 910..1051 | 355 | 93.3 | Plus |
| 3L | 28110227 | 3L | 16229301..16229340 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:21 has no hits.
UFO02050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:58 Download gff for
UFO02050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 193..1268 | 2..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:36 Download gff for
UFO02050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1274 | 2..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:56 Download gff for
UFO02050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5027-RA | 199..1274 | 2..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:56 Download gff for
UFO02050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16229298..16229340 | 2..48 | 91 | -> | Plus |
| 3L | 16229405..16229643 | 49..287 | 100 | -> | Plus |
| 3L | 16229701..16230324 | 288..910 | 99 | -> | Plus |
| 3L | 16230382..16230551 | 911..1067 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:36 Download gff for
UFO02050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16222505..16222743 | 49..287 | 100 | -> | Plus |
| arm_3L | 16222398..16222440 | 2..48 | 91 | -> | Plus |
| arm_3L | 16222801..16223424 | 288..910 | 99 | -> | Plus |
| arm_3L | 16223482..16223651 | 911..1067 | 91 | | Plus |
