UFO02051.5prime Sequence
1143 bp (1015 high quality bases) assembled on 2008-12-15
> UFO02051.5prime
CAGTCGACATGAAAGTGTTTGCCATCGCTTGTGTGACCCTCTTGGCGGCC
AGCTGCGTCTTTGCCGCGCCCAGTGTTCAAGACAACCAGGTCGAGGGCGA
CAATACCCTGGGCCGGGCCGCCCGGTATCTGGGCGCCTGTCTGGAGAGCG
ACGACATGGCCACCTGCCTGGCCGTCAAGGGCATCACCGCACTCAACCGC
GCCGCCAGGAGCAACAACATCGAGCTGGCCAGTGGAGTCACCTTCCAGAG
GGATCCCGCCAGTCCCGTTTCCCGCACGGGAAAATCGATGAGCGAGCAGG
ATGTCTATGCCGAGCTGCCCCAGAATGCCGATGAGCGTACTGGTCGTCTA
GTGGATCTGGCCGTCTCTAGTGCCGCCGACTTCCTAAGCACCCACAACCT
GGAGTTCAAGCTGCCCGCCGAGACCACCCAGCAGGTGGCTCGTGCCCTCG
ATGAAGGCCGTGGCAAGATCAAGAAGATGCTGGGACCCGTGGCTCTGGCC
ATTGGCGCCAAGCTGTTCGCCGTCATTCCCCTGGTGCTCGGGTTTCTGGC
CCTGCTGACCTTCAAGGCCGTGATCGTGGCCAAGCTGGCCTTCTTCCTGG
CCATTCTGGTCGGCGGATCCCGCCTGCTGGGCGGATTCGGCAACAAGTTC
GGAGGTAACTCCTTTGCCGGAGCCTACAACTCGAACGCATGGTCCGCACC
CGCCAGCGCCGGCTGGAGCTCGGGAGCCTCCTCGTCCTATCCCTATGCCC
GCAGCATCAGCGAGGATGGGTCCGATGCCCAGCAATTGGCCTACGCCGGC
CAGCAGCAGCAGGCAAGCTTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCCACCAATAAAA
AACGCCCGGCGCAACCGAGCGTTCTTGAACAAATCCAGATGGAGTTCTGA
GTCATTACTGGATTTATTCACAGGAGTCAAGCGAGCTCGAATCAAATTAC
GCCCCGCCTGCCACTCATCGCAGTACTGTTGTATCCATTAGGCATTCTTG
CCGAATGGAGCATCCAAACCGGCATGTATGAACTGGAATCGCC
UFO02051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi14-RA | 1091 | CG1155-RA | 124..927 | 9..812 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6300217..6300574 | 455..812 | 1790 | 100 | Plus |
| 3R | 32079331 | 3R | 6299251..6299493 | 9..251 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 6299957..6300165 | 249..457 | 1045 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5A | 2841 | G5A G5A 2841bp | 60..116 | 351..295 | 123 | 68.4 | Minus |
UFO02051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:56 Download gff for
UFO02051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi14-RA | 111..930 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:28 Download gff for
UFO02051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi14-RA | 115..934 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:47 Download gff for
UFO02051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi14-RA | 115..934 | 1..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:47 Download gff for
UFO02051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6299242..6299492 | 1..250 | 98 | -> | Plus |
| 3R | 6299959..6300164 | 251..456 | 100 | -> | Plus |
| 3R | 6300219..6300581 | 457..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:28 Download gff for
UFO02051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2124964..2125214 | 1..250 | 98 | -> | Plus |
| arm_3R | 2125681..2125886 | 251..456 | 100 | -> | Plus |
| arm_3R | 2125941..2126303 | 457..818 | 99 | | Plus |
