UFO02053.5prime Sequence
1108 bp (1009 high quality bases) assembled on 2008-12-15
> UFO02053.5prime
CAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGTCGCAGATG
CTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCGGTGTTCCG
CAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTCTGCCTATG
GGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGAAGCAGTTC
GTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTTGAGCATCC
AGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGCCGAGGTGG
GCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGTTGGAGTCC
GCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATCTCCGACGG
CTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAATCTGGTGA
GCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGGAGGTACTC
CGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTCCTCAACGA
TTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGGCACCTTCA
ACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGACTGACCAAG
TCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAAGGCGATGT
GACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCCCGTCGATA
TTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGGCCGACGAG
CTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGCCAGATCAA
GGCTATCGCCGACGCAGTGTCAAGGTGATTGTGGCCGGCGGCAAGGTTGG
CGACATGGCTCTGCACTTCCTTAACAAATACGGTCTGATGGCCGTGCGTC
TCAACTCTAAGTCGACTGCGTCGCTGGAGCGATCGTAACGCCCACTGTCT
GCCGCGCATCACCACGCCCAGTCAGGAGGAGTGGGCTACTGGCGACTAGT
TGCATCGAGGACTGGGGAACACCCACAATTTGTGCTCAGACCGAGGCAAG
ACTCCGCA
UFO02053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8258-RA | 1904 | CG8258-RA | 79..1158 | 9..1080 | 4975 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8905704..8906674 | 1032..68 | 4465 | 98.8 | Minus |
| 2R | 25286936 | 2R | 8906853..8906912 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:08 has no hits.
UFO02053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:55 Download gff for
UFO02053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 90..1172 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:44 Download gff for
UFO02053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..1161 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:46 Download gff for
UFO02053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8258-RA | 79..1161 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:46 Download gff for
UFO02053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8905661..8906673 | 69..1072 | 98 | <- | Minus |
| 2R | 8906853..8906912 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:44 Download gff for
UFO02053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4793166..4794178 | 69..1072 | 98 | <- | Minus |
| arm_2R | 4794358..4794417 | 9..68 | 100 | | Minus |
