UFO02056.5prime Sequence
1130 bp (1014 high quality bases) assembled on 2008-12-15
> UFO02056.5prime
CAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGCACACGCTG
ATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCCAACCAGGG
AAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACGTTCCATCA
AGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGAAGATCGGC
GAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAGACGCTGGC
CATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGGCAGTCTGG
TTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGCCACTGGTT
ACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAACAGCAATGC
AGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATTGATACCGA
AGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCTGGAAACTG
TCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATCGCCGTGGA
GCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGTGATCAAGA
TCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCGGTCATGTG
AGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTATCTGTTTAG
CTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTACAACAAAG
TCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGCTGGCCCTG
CATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCCACTGCCCG
CATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGACGGGCCATA
CGAACACGGTGGCCAGTGTGGTGCGCAGCCACCAATCCGCAGATCATCAC
CGGCTCCCACGATTCCACGGTGGCGTCTGTGGGATTTGCCGCGGCAAGAG
CGTCTGCACGCTAACCATCACAAGAAGTCGTGCGCAGCATAGTCCTCCAT
CCATCGCAGTACTGTTCGCCCTCCGCCTCGCCGATACATCAGCATGGGCC
GGTCGAGCTAAGTGCAACCTTCCGGCACGT
UFO02056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1620 | CG1796-RA | 93..1172 | 9..1083 | 5170 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12021338..12022298 | 128..1083 | 4360 | 98.3 | Plus |
| X | 23542271 | X | 12021160..12021278 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:43 has no hits.
UFO02056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:52 Download gff for
UFO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 91..1194 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:15 Download gff for
UFO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 87..1190 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:15 Download gff for
UFO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 87..1190 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:15 Download gff for
UFO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12021154..12021278 | 1..127 | 97 | -> | Plus |
| X | 12021338..12022316 | 128..1097 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:15 Download gff for
UFO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11915187..11915311 | 1..127 | 97 | -> | Plus |
| arm_X | 11915371..11916349 | 128..1097 | 98 | | Plus |
