UFO02057.5prime Sequence
1135 bp (1027 high quality bases) assembled on 2008-12-15
> UFO02057.5prime
CAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCAACTCGATT
CAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAATTTGGGAGA
CGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGGCCACGCCA
AGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACGCCACCAAT
ATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGCCACCGCGA
CGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGCGGTAAACG
AGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCTATGACATG
ATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATCGCAAACAA
GGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGCCAAGAGGC
TTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTATCAGCTTC
AAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGATGCTACTTT
GTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCATACCAAGC
TGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGCAAAAGAAC
GATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCTCGTATATC
GCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTCGCACCCTA
ACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATCTGGTGACA
ATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTGCATGGAGC
AACTGGCGTCGTGTGGACACCAGCCAGGCGGTAAGCTTTGCCTTGGATGT
TGCGAGAGGAATGGCTTTCCTGCACTCGCTGGAGCGCATTATTCACATAT
CACCTGAACAGTCATCACGTGATGATCGACGATGATCTGACGGCGAGAAT
CAACATGGGGCGATGCCAAATTCTCTTTCAGGAGGAGACGCATCTATCAA
CGGGCCTGATGTCGCGGAACATTGCAGCGCAAGCAGGCGGATCGAACCTG
GGAGGCTGGTACATGTGGGGACTTGCTATCTATTG
UFO02057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ilk-RA | 1806 | CG10504-RA | 164..1293 | 9..1129 | 5250 | 98.1 | Plus |
| Ilk-RB | 671 | CG10504-RB | 164..252 | 9..97 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21217790..21218336 | 263..809 | 2735 | 100 | Plus |
| 3L | 28110227 | 3L | 21218397..21218703 | 808..1106 | 1060 | 94.2 | Plus |
| 3L | 28110227 | 3L | 21217566..21217736 | 97..267 | 840 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21217064..21217152 | 9..97 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:49 has no hits.
UFO02057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:50 Download gff for
UFO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ilk-RA | 163..1294 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:20 Download gff for
UFO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ilk-RA | 156..1287 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:45 Download gff for
UFO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ilk-RA | 156..1287 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:45 Download gff for
UFO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21217056..21217152 | 1..97 | 95 | -> | Plus |
| 3L | 21217567..21217732 | 98..263 | 100 | -> | Plus |
| 3L | 21217791..21218336 | 264..809 | 100 | -> | Plus |
| 3L | 21218399..21218721 | 810..1124 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:20 Download gff for
UFO02057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21210156..21210252 | 1..97 | 95 | -> | Plus |
| arm_3L | 21210667..21210832 | 98..263 | 100 | -> | Plus |
| arm_3L | 21210891..21211436 | 264..809 | 100 | -> | Plus |
| arm_3L | 21211499..21211821 | 810..1124 | 93 | | Plus |
