UFO02058.5prime Sequence
1133 bp (1009 high quality bases) assembled on 2008-12-15
> UFO02058.5prime
CAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGTTGCTCAAG
AATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAGTTCGAGGT
CGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGACAGCGACA
GCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGGAGCTACGT
TCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATGAGCGAGAT
CGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGTGGATCGGG
AGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTGGCTACTGG
GAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGCAGCAAATT
CGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGAGGTCGCCG
TCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCTCCTACAAG
CTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCCAAGGCGGA
TGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGGAGATGCGA
AGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTTGTGTGGTC
TATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCGGTGAAGCT
CGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGTGAGCTCAC
TGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGCAAACTGAA
CTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAACAAGATGAA
CAAGCCGAAGCGCGCCTGCATCATGATGAACGCCTTACGGCACCTGACCA
TGGGCAATCCGTCTTGCAAGCGCTCTTCCAGGAGGGACGCCGCCCTGGCC
GCTCTGGGCGAGTACACTTGCCCGCAACGCTTACCTGCAGCCGCAGCCAG
CAGCGGCGAACAGAGATCAGCGACGAGAATTATCAGCATGACAAGAGAAT
CAGCAGTATGGAGGAGGCCAGTCCCGATTATGGCACGGTGCCTTCTCGTT
AAGAACTCAGTCGAACTTCGCAACGCCCTGCCT
UFO02058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shu-RA | 1694 | CG4735-RA | 93..1202 | 9..1109 | 5110 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23842328..23843078 | 818..68 | 3755 | 100 | Minus |
| 2R | 25286936 | 2R | 23841961..23842252 | 1102..819 | 750 | 90.8 | Minus |
| 2R | 25286936 | 2R | 23843135..23843194 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:13 has no hits.
UFO02058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:07 Download gff for
UFO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 86..1195 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:02 Download gff for
UFO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1202 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:21 Download gff for
UFO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shu-RA | 93..1202 | 9..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:21 Download gff for
UFO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23841930..23842252 | 819..1127 | 91 | <- | Minus |
| 2R | 23842328..23843078 | 68..818 | 100 | <- | Minus |
| 2R | 23843136..23843194 | 9..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:02 Download gff for
UFO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19729453..19729775 | 819..1127 | 91 | <- | Minus |
| arm_2R | 19729851..19730601 | 68..818 | 100 | <- | Minus |
| arm_2R | 19730659..19730717 | 9..67 | 100 | | Minus |
