UFO02059.5prime Sequence
1114 bp (990 high quality bases) assembled on 2008-12-15
> UFO02059.5prime
CAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGTGTGGCCTC
CTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAGGAGGACAC
CGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGAAACCTTCG
ACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTGCTCCATGG
TGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTGGCCGAGAT
CATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGACTGCACCA
AGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATCCCACACTG
CGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAGGGCACTCG
CGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAGCGCACCCG
CTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGAACCTTAAT
ATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAGCACGTGTC
CACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAGTCATTGTC
AGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGATTAAAGAG
CCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGTTCCATCTG
CCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGATCGAGGATG
GCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCACGCTGAAA
ACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACCGCTGGCGA
GGCCGGCGATGAGAATGTGGTTATCGAGGAGGTGCCGGCGAGGAGGACGC
AGCCAGAGCTGACTCCCACAACAGCTGACTGGCGAGGACGAGTTCGACCA
AGCCATTGCCGAGGCGTTGCCTTCATTAAGTCTATGCTCGTGTGTGACAC
TGCAGAAGCTGCAACCCACTGGGAGCAGCTGCCACGGAACGCACCAGGCT
CAAGTCGTGAATGCAGTTGACCTGCCGGCCGAAACAGCAGGTGTGCATCC
GACCACAGTGAAGG
UFO02059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prtp-RC | 1740 | CG1837-RC | 83..1138 | 8..1052 | 4945 | 98.7 | Plus |
| prtp-RB | 1746 | CG1837-RB | 89..1144 | 8..1052 | 4945 | 98.7 | Plus |
| prtp-RA | 1763 | CG1837-RA | 106..1161 | 8..1052 | 4945 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11718367..11718770 | 199..602 | 2020 | 100 | Plus |
| X | 23542271 | X | 11718829..11719292 | 600..1052 | 1690 | 95.9 | Plus |
| X | 23542271 | X | 11717073..11717267 | 8..202 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:27 has no hits.
UFO02059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:04 Download gff for
UFO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1837-RA | 98..1173 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for
UFO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..1173 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:53 Download gff for
UFO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prtp-RA | 98..1173 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:53 Download gff for
UFO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11717065..11717264 | 1..199 | 98 | -> | Plus |
| X | 11718368..11718770 | 200..602 | 100 | -> | Plus |
| X | 11718832..11719304 | 603..1061 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for
UFO02059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11611098..11611297 | 1..199 | 98 | -> | Plus |
| arm_X | 11612401..11612803 | 200..602 | 100 | -> | Plus |
| arm_X | 11612865..11613337 | 603..1061 | 96 | | Plus |
