UFO02060.5prime Sequence
1120 bp (984 high quality bases) assembled on 2008-12-15
> UFO02060.5prime
CAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACGAGGTTGAG
GAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGATGTCCTGGA
ACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGGCGCCTCCG
ATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGACAGGCTCTG
TACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTGGACAAGGC
CGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCACCACGAAC
TGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTCCCACCCAG
CGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTTCAACCACG
TAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTACTGCAAGT
GCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGGTTATGCTG
CAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATGAAAGCGCC
CGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGATTTGCGATG
GCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGATTAGCCCTG
CAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCTGACGATAG
CCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCATGAAAGTTC
CTGAATGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGAAGCGCGCC
AACTGGACGATTGTCGTCGGCCCAAACCAACCAAGGAGCATCAGGAGCTG
CTTTCTGGACAAATGACTGGCGAAAATCACTCTGTCAGTGCTCCGAATGC
CTGTCGCTTTACAGGAACTTGCCGTGGAGTTTCTGCTGGATGTCGAGGAT
TCGCTAAGACGTACGAGGAGCCGCGGCATGAGCGGCTGAGAGATCAGTTA
TGAGCAGATCCGGCACTGCTCATGACGGAACCAGCCAATCGATGCATACG
ATACATCGCATGAGACAGCTAAGATCTGCAGCATCCCGCCCGACGAAGGT
ATGACCGGAGAGAAATCATC
UFO02060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15141-RA | 1683 | CG15141-RA | 138..1147 | 6..1006 | 4775 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17410778..17411618 | 6..845 | 4140 | 99.8 | Plus |
| 2L | 23513712 | 2L | 17412793..17412923 | 843..971 | 555 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:11 has no hits.
UFO02060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:01 Download gff for
UFO02060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15141-RA | 117..1147 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:35 Download gff for
UFO02060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15141-RA | 133..1163 | 1..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:54 Download gff for
UFO02060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15141-RA | 133..1163 | 1..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:54 Download gff for
UFO02060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17410773..17411618 | 1..844 | 99 | -> | Plus |
| 2L | 17412795..17412923 | 845..971 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:35 Download gff for
UFO02060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17410773..17411618 | 1..844 | 99 | -> | Plus |
| arm_2L | 17412795..17412923 | 845..971 | 98 | == | Plus |
