UFO02062.5prime Sequence
1138 bp (1022 high quality bases) assembled on 2008-12-15
> UFO02062.5prime
CAGTCGACATGCGGACGCACGGACTACGGTTGGTGCTCTTGGCCCTGCTG
CCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGCAAGGAAAA
CTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTCGGAGATCG
GCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATCTGCATCGG
GGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTGGTGGCCAC
CGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTACGATTACA
TGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCTACTACCGG
CGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTGGTCGTCCT
AACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCGCTACGATT
CTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACCAGGCCCTG
GAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAGGGCAAGAA
TCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGATCATCCGGC
GGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGAAGCCGACA
CTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTACACGATACT
CTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACACGGTAATGA
AGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCCGGCACCTG
GGCATGGGGCCAGCATCAGTTCGAGGCGCAAGGAGGACAAGCTGATCGAG
GAGTACCTGCATCTGAAGCTGTGGGAAGCGCGAGACTTCGTCGGCCTGGA
AGGCAGAACAGGAAGAGGGAGATGAAAAAGAAGCTGGCGGAGATCCACGA
TAACAGGCGTACAGGCGGAATAATGAAGAACCACGGACCCGGCCGCATCA
CCTTTGAGGATGCAAGCTTTCTAGACATTCGTTTGGGCGCGCGGGCCCAG
GGTAGTGGTCAAATCATATCATATCATATCATATCATAATCTATATCCAC
ACTAGCTTAGGAGATCCTGCTATGACTAGGCTGGTATT
UFO02062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 230..1228 | 9..1011 | 4760 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578434..15579432 | 9..1011 | 4550 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 22:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4179 | 816..869 | 114 | 70.4 | Plus |
UFO02062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:45 Download gff for
UFO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 345..1347 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:17 Download gff for
UFO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1232 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:28 Download gff for
UFO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1232 | 9..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:28 Download gff for
UFO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578434..15579432 | 9..1011 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:17 Download gff for
UFO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472467..15473465 | 9..1011 | 98 | == | Plus |
