UFO02063.5prime Sequence
1101 bp (970 high quality bases) assembled on 2008-12-15
> UFO02063.5prime
CAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCATCCTGGAG
CAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTCTTTTCGGC
CACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTTGTCGAGGA
AGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGCTGGTGGAC
TTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCCCTCCGGCG
CGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCACCTGGTGC
AAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGTTGATTAAT
TCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTAGCCGAGAA
TGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTTTCTCGAAA
TGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGGTGGGCGAC
GACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGCGATTTCTT
TAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACAAAAAGGAG
AAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGCACCTGAAC
CACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTGGATGCTAT
TGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATTCATATTAA
AGATTATGTATAACACAACTGATCCGTGGGAAAAGAAAACTCTCCAATCA
AATAACTTTCGTTGAAATTAACAGGCTATTGAAAGAAAATCGAATAACCT
GGATCTCATGAAGTACTTGGACCAGTACATAAGCCTATTGACTGAGGACT
CACTGGGATTCTTTCGAAGAGTTGGCGACATGGGTGGTGGTGTGTATGTG
GTGGATATTGAACATGCCTTCGAGTCGCTGGCCTTTGCTTGTGTGGAAGT
GTGTCATCACGACGATTTGCTCAAAGCAGCTCGAATATTTTCGAGTGATC
GATGCAGAAAACATAGACCGAGACTTGCAGAGCATGATCCATCTGAGCCA
G
UFO02063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12267-RB | 1650 | CG12267-RB | 65..1129 | 8..1067 | 5045 | 98.8 | Plus |
| CG12267-RA | 1592 | CG12267-RA | 7..1071 | 8..1067 | 5045 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12460872..12461372 | 283..783 | 2505 | 100 | Plus |
| 3R | 32079331 | 3R | 12460528..12460803 | 8..283 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 12461601..12461719 | 892..1011 | 535 | 98.3 | Plus |
| 3R | 32079331 | 3R | 12461438..12461548 | 787..896 | 490 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:20 has no hits.
UFO02063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:44 Download gff for
UFO02063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 60..1128 | 8..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:04 Download gff for
UFO02063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 2..1075 | 6..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:50 Download gff for
UFO02063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12267-RA | 2..1075 | 6..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:50 Download gff for
UFO02063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12460528..12460803 | 8..283 | 100 | -> | Plus |
| 3R | 12460873..12461374 | 284..786 | 99 | -> | Plus |
| 3R | 12461438..12461543 | 787..891 | 99 | -> | Plus |
| 3R | 12461601..12461785 | 892..1072 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:04 Download gff for
UFO02063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8286250..8286525 | 8..283 | 100 | -> | Plus |
| arm_3R | 8286595..8287096 | 284..786 | 99 | -> | Plus |
| arm_3R | 8287160..8287265 | 787..891 | 99 | -> | Plus |
| arm_3R | 8287323..8287507 | 892..1072 | 93 | | Plus |
