UFO02064.5prime Sequence
1112 bp (1021 high quality bases) assembled on 2008-12-15
> UFO02064.5prime
CAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCGATGGCAAG
GCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTCAAGGGAAT
GGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCATTGTGGGCG
AGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCGCCTGCCGG
GAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCTACCACGCA
GGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCCCCAGGTCA
CGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATGAGCGCACC
ATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTCAATGAGGT
CAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCCGGCCACGC
CGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAACTCTCGGT
CGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTACCGATGGC
AATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAATGGATGCCA
CGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGGCTCGCCAT
TGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCGGGTTTGAT
CACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGTGGGCATCA
ACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCGGAGACGTG
GACTTTGAAGAAGTTCGCCAGGTCGCCCGGCCACATCACTCCTGTGCCCG
GCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACACACGCTGAAGC
AGCCAGGAGCAGTTCGATGATCGCAAGTCCTCCGCAAGCTTTCTAGACAT
TCGTTGGCGCGCGGGCCCAGGTAGTGGTCATATCATATCATATCATATCA
TATCACACTAGCCTAAGAGATCTGTCATGACTAGTGCTGATTCCTCACAA
TAAACGCGCGCACCGAGCGTTCTGACCATCGAATGATCTGAAGTCATATC
GGATTACACGGA
UFO02064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdmc-RB | 1257 | CG18466-RB | 179..1105 | 9..933 | 4540 | 99.6 | Plus |
| Nmdmc-RA | 1156 | CG18466-RA | 89..1004 | 20..933 | 4485 | 99.6 | Plus |
| Nmdmc-RC | 1233 | CG18466-RC | 167..1081 | 21..933 | 4480 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9042852..9043641 | 810..21 | 3950 | 100 | Minus |
| 3R | 32079331 | 3R | 9042660..9042793 | 933..802 | 460 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:07 has no hits.
UFO02064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:41 Download gff for
UFO02064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 164..1107 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:34 Download gff for
UFO02064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1113 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:32 Download gff for
UFO02064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdmc-RB | 170..1113 | 1..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:32 Download gff for
UFO02064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9042652..9042784 | 811..941 | 94 | <- | Minus |
| 3R | 9042852..9043639 | 23..810 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:34 Download gff for
UFO02064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4868374..4868506 | 811..941 | 94 | <- | Minus |
| arm_3R | 4868574..4869361 | 23..810 | 100 | <- | Minus |
