Clone UFO02066 Report

Search the DGRC for UFO02066

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:20
Well:66
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5886-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02066.5prime Sequence

1103 bp (1007 high quality bases) assembled on 2008-12-15

> UFO02066.5prime
CAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGCGCGAGGAG
AAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCCCTTGACGA
ATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACGCCATGTGG
ACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTGTCCTGCAG
CGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAGCGGGATCT
TAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTGCCGCGAAC
AGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGCAAATCAAA
GTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAAAGCTCCCT
GAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAACATCAAGC
TGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGCTGGCCGAG
CAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAACAGGTTCA
GTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCAGGTGGAGG
CTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTGGCCTGGAG
AAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGATCGGGAGCA
CCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGATGACTTCC
AGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACAAGGTGGAG
CTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAGGCGCTGGG
CTGGCGGCAAAAGTACGAGAAGCTAATGCCATGGTGATCGATTTAGCCAC
AGAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGAGCAAATACAG
CAGCTGCAGAGCTACTGCGTGCTCTACAGCTGGAGAGACAACACTGCACA
AGTGCCTGCGGGATCACGAGATCGAATACCGCCCTGCCGCAGTGCCTCCT
GACCGAGCAGTACGTCAGGCAGTTATTCTGAAATGTTAATGATGATGTTC
TCG

UFO02066.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 101..1198 8..1089 5070 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25851919..25852322 80..483 2020 100 Plus
3R 32079331 3R 25852817..25853219 629..1026 1765 98.8 Plus
3R 32079331 3R 25852428..25852575 482..629 740 100 Plus
Y 3667352 Y 1457593..1457737 186..333 435 87.8 Plus
Y 3667352 Y 1883828..1883972 333..186 435 87.8 Minus
Y 3667352 Y 1888797..1888941 333..186 435 87.8 Minus
3R 32079331 3R 25851732..25851806 8..82 375 100 Plus
3L 28110227 3L 23315659..23315764 321..216 290 84.9 Minus
Blast to na_te.dros performed on 2014-11-28 22:41:54 has no hits.

UFO02066.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:38 Download gff for UFO02066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 71..1144 1..1062 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:29 Download gff for UFO02066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 93..1166 1..1062 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:49 Download gff for UFO02066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 93..1166 1..1062 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:49 Download gff for UFO02066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25852428..25852574 482..628 100 -> Plus
3R 25851920..25852320 81..481 100 -> Plus
3R 25851724..25851804 1..80 95 -> Plus
3R 25852817..25853261 629..1062 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:29 Download gff for UFO02066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21677446..21677526 1..80 95 -> Plus
arm_3R 21677642..21678042 81..481 100 -> Plus
arm_3R 21678150..21678296 482..628 100 -> Plus
arm_3R 21678539..21678983 629..1062 97   Plus