UFO02066.5prime Sequence
1103 bp (1007 high quality bases) assembled on 2008-12-15
> UFO02066.5prime
CAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGCGCGAGGAG
AAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCCCTTGACGA
ATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACGCCATGTGG
ACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTGTCCTGCAG
CGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAGCGGGATCT
TAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTGCCGCGAAC
AGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGCAAATCAAA
GTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAAAGCTCCCT
GAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAACATCAAGC
TGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGCTGGCCGAG
CAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAACAGGTTCA
GTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCAGGTGGAGG
CTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTGGCCTGGAG
AAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGATCGGGAGCA
CCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGATGACTTCC
AGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACAAGGTGGAG
CTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAGGCGCTGGG
CTGGCGGCAAAAGTACGAGAAGCTAATGCCATGGTGATCGATTTAGCCAC
AGAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGAGCAAATACAG
CAGCTGCAGAGCTACTGCGTGCTCTACAGCTGGAGAGACAACACTGCACA
AGTGCCTGCGGGATCACGAGATCGAATACCGCCCTGCCGCAGTGCCTCCT
GACCGAGCAGTACGTCAGGCAGTTATTCTGAAATGTTAATGATGATGTTC
TCG
UFO02066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 101..1198 | 8..1089 | 5070 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25851919..25852322 | 80..483 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 25852817..25853219 | 629..1026 | 1765 | 98.8 | Plus |
3R | 32079331 | 3R | 25852428..25852575 | 482..629 | 740 | 100 | Plus |
Y | 3667352 | Y | 1457593..1457737 | 186..333 | 435 | 87.8 | Plus |
Y | 3667352 | Y | 1883828..1883972 | 333..186 | 435 | 87.8 | Minus |
Y | 3667352 | Y | 1888797..1888941 | 333..186 | 435 | 87.8 | Minus |
3R | 32079331 | 3R | 25851732..25851806 | 8..82 | 375 | 100 | Plus |
3L | 28110227 | 3L | 23315659..23315764 | 321..216 | 290 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:54 has no hits.
UFO02066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:38 Download gff for
UFO02066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 71..1144 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:29 Download gff for
UFO02066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 93..1166 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:49 Download gff for
UFO02066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 93..1166 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:49 Download gff for
UFO02066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25852428..25852574 | 482..628 | 100 | -> | Plus |
3R | 25851920..25852320 | 81..481 | 100 | -> | Plus |
3R | 25851724..25851804 | 1..80 | 95 | -> | Plus |
3R | 25852817..25853261 | 629..1062 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:29 Download gff for
UFO02066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21677446..21677526 | 1..80 | 95 | -> | Plus |
arm_3R | 21677642..21678042 | 81..481 | 100 | -> | Plus |
arm_3R | 21678150..21678296 | 482..628 | 100 | -> | Plus |
arm_3R | 21678539..21678983 | 629..1062 | 97 | | Plus |