UFO02067.5prime Sequence
1112 bp (1006 high quality bases) assembled on 2008-12-15
> UFO02067.5prime
CAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATTTCTTTTAC
GGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCCAAGAAGTC
AGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCATTACAACT
TCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGGAGGAGGGC
AGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAGTACTCGCT
GCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCACATCACCG
AGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGAAGGTATCC
AACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAGGGAGGCAT
CACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTACCGTAGGG
AGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTACCACGCAG
ACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCCTTGCGCAT
CGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATTCGAGCCTC
GCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATCCACTGGGT
CGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCAAATATGGG
CCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAACCCGAATA
GGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCACCAGATTGG
AATCCCGATTACTACATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGATTCTCACAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAATCAGAATGAGTTCTGAGT
CATACTGATCTATCAACAGAGTCAGGCGAGCTCGATATCAAATACGCCCC
CGCTGCCACTCATCGCAGTATTTTTGTATTTCATTAGCATTCTGCGACTG
AGCCATCCAACG
UFO02067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PI31-RF | 1172 | CG8979-RF | 173..982 | 9..818 | 4050 | 100 | Plus |
| PI31-RD | 1118 | CG8979-RD | 119..928 | 9..818 | 4050 | 100 | Plus |
| PI31-RB | 1203 | CG8979-RB | 204..1013 | 9..818 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11967837..11968231 | 571..177 | 1975 | 100 | Minus |
| 2R | 25286936 | 2R | 11967533..11967780 | 818..571 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 11968284..11968451 | 176..9 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:22 has no hits.
UFO02067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:37 Download gff for
UFO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8979-RB | 109..928 | 1..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:02 Download gff for
UFO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 199..1018 | 1..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:00 Download gff for
UFO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PI31-RB | 199..1018 | 1..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:00 Download gff for
UFO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11967528..11967779 | 572..826 | 98 | <- | Minus |
| 2R | 11967837..11968231 | 177..571 | 100 | <- | Minus |
| 2R | 11968284..11968455 | 1..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:02 Download gff for
UFO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7855033..7855284 | 572..826 | 98 | <- | Minus |
| arm_2R | 7855342..7855736 | 177..571 | 100 | <- | Minus |
| arm_2R | 7855789..7855960 | 1..176 | 97 | | Minus |
