UFO02068.5prime Sequence
1133 bp (1041 high quality bases) assembled on 2008-12-15
> UFO02068.5prime
CAGTCGACATGTTTTTGCATAACACAAAGTTTTGCAGACTGGCAAGTGGT
CTGGCAGGAGGAGTGCGCAACCTGAGCGGCCAAAAACCGAAGACCGCGAT
CCTAATGCTGAACATGGGCGGTCCGACCCACACGGACCAGGTGCATGACT
ACCTCCTGCGTATTATGACCGACCGGGACATGATCCAGCTGCCGGTGCAG
AGCCGTCTTGGTCCGTGGATCGCCCAGCGCAGGACGCCCGAGGTACAGAA
GAAGTACAAGGAGATCGGCGGTGGTTCACCGATTCTTAAGTGGACCGAGC
TGCAGGGCCAGCTCATGTGCGAGCAGTTGGACAGAATCTCCCCGGAGACA
GCACCTCACAAGCACTACGTCGGTTTCCGCTACGTGAATCCCCTCACTGA
GAACACGCTGGCCGAGATCGAAAAGGACAAACCAGAGCGCGTTGTACTCT
TTTCACAATATCCACAGTACAGCTGCGCCACCTCCGGATCCAGCTTTAAC
TCCATATTTACTCATTATCGGAGCAATAATCTGCCCTCGGATATCAAATG
GAGCATTATCGACAGGTGGGGCACTCATCCACTTCTAATCAAAACGTTTG
CCCAGCGAATTCGCGACGAGCTGGCCAAATTTGTGGAAACGAAACGAAAT
GATGTGGTCATCCTCTTCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAA
CCGGGGTGACGCGTATCCCTCGGAGATTGGTGCTAGCGTACACATGGTGA
TGCAGGAACTTGGTCAGACGAATCCCTACAGCCTGGCATGGCAATCCAAG
GTGGGCCCGCTACCCTGGCTGGCGCCCGCAACTGATGATGCCATTAAGGT
GGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGCACCG
AGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCATACTGGATCTATCA
ACAGGAGTCAAGCGAGCTCGAATATCAAATACGCCCGCCTGCCACTCATC
CAGTACTGGGTGTAATTTCATTAGCACTTCGCG
UFO02068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FeCH-RC | 1466 | CG2098-RC | 87..929 | 9..851 | 4215 | 100 | Plus |
| FeCH-RA | 1407 | CG2098-RA | 87..927 | 9..849 | 4205 | 100 | Plus |
| FeCH-RB | 1338 | CG2098-RB | 1..480 | 47..526 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31811740..31812119 | 425..46 | 1900 | 100 | Minus |
| 3R | 32079331 | 3R | 31810997..31811321 | 851..527 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 31811377..31811478 | 526..425 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 31812171..31812210 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:04 has no hits.
UFO02068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:35 Download gff for
UFO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ferrochelatase-RC | 47..903 | 2..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:58 Download gff for
UFO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RC | 80..936 | 2..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:15 Download gff for
UFO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RC | 80..936 | 2..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:15 Download gff for
UFO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31810990..31811321 | 527..860 | 99 | <- | Minus |
| 3R | 31811377..31811478 | 425..526 | 100 | <- | Minus |
| 3R | 31811741..31812119 | 46..424 | 100 | <- | Minus |
| 3R | 31812174..31812217 | 2..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:58 Download gff for
UFO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27637099..27637200 | 425..526 | 100 | <- | Minus |
| arm_3R | 27637463..27637841 | 46..424 | 100 | <- | Minus |
| arm_3R | 27636712..27637043 | 527..860 | 99 | <- | Minus |
| arm_3R | 27637896..27637939 | 2..45 | 91 | | Minus |
