UFO02069.5prime Sequence
1140 bp (1023 high quality bases) assembled on 2008-12-15
> UFO02069.5prime
CAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCATCAATTCG
GCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTGCCGGACGA
CGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCAGTACAGAG
GCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGTCCCTGCAG
AACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGGATGCACCA
GAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCAGATCGTCA
ATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGGACACCGAC
CAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCGCTCCTGGA
CGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGATGAGGGAGC
AGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAAACGGCCTG
CTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGTGGTGTTGT
GCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTCAACGCCCA
ACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCGGCTCCAAT
GGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACAGGTAGCAA
GCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAGCTCTCTGG
AGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTGGCAGTGGT
GGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGTGGAGCGGG
ACAGGGACGAAAGGCCAGTCTGCAGTCGGCTTCTGGCAGTTTGGCTAGCG
GCTCTGCAGCCACGAGCAGTGAGCAGCGGAGTGGTGGTGCCAGCGGAGCC
GGCGTAGTGGTGCATATTCCGGCAGAAGAAAGCGCAAGGTACGCGGTTCT
GGGCTTCAATGCATGCCAGTACGCGAGAGAAACGCCGCCGCCGGAAACAT
GATCGACGAGCGAACTACTGGTGTCTGCAATCGATCTCTTTGGCGAGATG
ATTCGTGTGCACAATGACTTGCATTCGGAGTGGTCCATTT
UFO02069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7379-RA | 1787 | CG7379-RA | 196..1326 | 9..1118 | 5010 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17797076..17797888 | 958..149 | 3920 | 99.4 | Minus |
| 3R | 32079331 | 3R | 17797967..17798109 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:52 has no hits.
UFO02069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:34 Download gff for
UFO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 209..1350 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:16 Download gff for
UFO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1329 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:33 Download gff for
UFO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7379-RA | 188..1329 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:33 Download gff for
UFO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17796934..17797886 | 151..1083 | 97 | <- | Minus |
| 3R | 17797968..17798113 | 1..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:16 Download gff for
UFO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13622656..13623608 | 151..1083 | 97 | <- | Minus |
| arm_3R | 13623690..13623835 | 1..150 | 97 | | Minus |
