UFO02070.5prime Sequence
1130 bp (1030 high quality bases) assembled on 2008-12-15
> UFO02070.5prime
CAGTCGACATGACCCAACAGAGGCCAGCTTTCGACTCCAATGCGATGACG
CTGACGCGTTTCGTGCTGCAGGAGCAGCGAAAGTTCAAGAGCGCCACTGG
CGATCTCTCCCAGCTGCTCAACTCCATCCAGACCGCCATCAAGGCTACAT
CATCCGCGGTGCGGAAGGCAGGTATCGCCAAGCTCCATGGATTCGCTGGC
GACGTGAATGTCCAAGGCGAGGAGGTCAAGAAACTGGACGTGCTCTCCAA
CGAGCTGTTCATCAACATGCTGAAGTCATCCTATACCACATGTCTAATGG
TTTCCGAGGAGAACGAGAATGTGATCGAGGTGGAAGTGGAGAAACAGGGC
AAATACATCGTGTGCTTCGATCCCTTGGATGGATCCTCCAACATAGACTG
CCTGGTGTCGATCGGTTCAATCTTCGCCATTTACCGCAAGAAAAGCGATG
GTCCGCCCACAGTGGAGGATGCACTGCAGCCCGGAAATCAGCTGGTGGCC
GCCGGCTACGCGCTATACGGTTCGGCCACAGCAATTGTCCTGGGTCTGGG
TTCGGGAGTGAATGGCTTCACTTATGACCCGGCCATCGGAGAGTTCGTGC
TGACCGATCCCAACATGCGGGTGCCGGAGAAGGGAAAGATATACTCTATC
AACGAGGGATATGCAGCGGATTGGGAGGATGGTGTCTTCAACTACATTGC
GGCCAAGAAGGATCCCGCCAAGGGAAAGCCCTATGGAGCGCGGTACGTGG
GTTCCATGGTCGCGGATGTGCATCGCACCATTAAATACGGCGGCATCTTT
ATCTATCCGGCAACAAAGTCCGCTCCCAGCGGAAAACTTCGTCTGCTGTA
CGAGTGCGTGCCATGGCCTATCTGATGATCCAGGCTGGAGGTCTGGCCAG
CGACGGAAAGATCAGCATTTTGGACATTGTGCCCAAGAAAGATCCACGAG
CGCAGTCCCATATCCTAGGATCCAGTCCGACGTGGAGAGCACTTAGCTAC
TTAAAGCAAGCTTTCTAGAACATTCGTTTGGCGCCGGTCAGGGTAGTTGT
CATAATCATATCATAATCTAATCATAATCCAACTAGCCTAGGAAATCTGT
TATACTAGTGCTGAATTTCCACATAAAAGG
UFO02070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbp-RE | 1202 | CG31692-RE | 145..1146 | 9..1006 | 4865 | 99.4 | Plus |
| fbp-RA | 1130 | CG31692-RA | 73..1074 | 9..1006 | 4865 | 99.4 | Plus |
| fbp-RD | 1185 | CG31692-RD | 140..1129 | 21..1006 | 4805 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19761643..19762308 | 1006..345 | 3055 | 99 | Minus |
| 2L | 23513712 | 2L | 19762487..19762826 | 348..9 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:36 has no hits.
UFO02070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:48 Download gff for
UFO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RB | 143..1149 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:10 Download gff for
UFO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RA | 73..1079 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:12 Download gff for
UFO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbp-RA | 73..1079 | 9..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:12 Download gff for
UFO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19761643..19762305 | 348..1006 | 99 | <- | Minus |
| 2L | 19762488..19762833 | 1..347 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:10 Download gff for
UFO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19761643..19762305 | 348..1006 | 99 | <- | Minus |
| arm_2L | 19762488..19762833 | 1..347 | 98 | | Minus |
