UFO02071.5prime Sequence
1086 bp (972 high quality bases) assembled on 2008-12-15
> UFO02071.5prime
CAATGCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGCGATCGCA
GCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAAAATGTCG
TTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAAGAAGGAT
GTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCGATGTGAT
GAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGACGCCAAGT
TCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCTGGCCACC
GAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGAAGAATAC
GGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCATTGCTCCA
TGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAAGGTCAAG
CAGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGGCATCAGCACCTTGTCGTCTTGCGTATTATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAAGACGAAAAACATATTCTC
AATAACCTTTAGGGAAATAGGCAAGTTTTCACCGTACACGCCAATCTTGC
GAATTATTGTGTAAGAACTGCGAAATTCGTCTGGATTCACTCAGAGCGAT
TGAAACGGTTTCAGTTGCCTCATGGAAACGTGTAAC
UFO02071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9836-RA | 955 | CG9836-RA | 107..568 | 10..471 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8823427..8823801 | 471..97 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 8823983..8824071 | 98..10 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:52 has no hits.
UFO02071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:46 Download gff for
UFO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 103..564 | 10..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:28 Download gff for
UFO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 107..568 | 10..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:43 Download gff for
UFO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9836-RA | 107..568 | 10..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:43 Download gff for
UFO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8823427..8823801 | 97..471 | 100 | <- | Minus |
| 3R | 8823985..8824071 | 10..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:28 Download gff for
UFO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4649149..4649523 | 97..471 | 100 | <- | Minus |
| arm_3R | 4649707..4649793 | 10..96 | 100 | | Minus |
