UFO02073.5prime Sequence
1086 bp (994 high quality bases) assembled on 2008-12-15
> UFO02073.5prime
CAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAAATCGATCC
GATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGCGCCAGCTC
CATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAACACCCTCGA
GGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGACCACAATC
AAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAGACCCTTGG
AATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCTGCTAAGAC
GCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTATCCATGGAG
GTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTGGACGACGA
CACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGAGTCCCGAT
TCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACACCTCCGCG
CTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAGGAGACCAC
CTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTCACCCGAGC
CGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGGAGTGTCAG
CGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATGGAGCGGAT
GAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCCCAATTACG
CACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTGGACAGGCC
GCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCCTTGGAGTC
GGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAGCGAGATGC
CGAGATGAAGACGAGTGTGCTAGCAGTCTGGCTCCTCGATATCACAGATG
TGCCTACGCGGGACTTTACGTCCACACCACGCCGCAGCTCTGCTCAGTGT
GCCCCAGTGCCGTTCGTGTCACCCGCCGGTCTACAGCTCGGTACAACTAC
GCAGAATCGACGCTCGCACTTCTTCCCTGCTGAGGC
UFO02073.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 565..1659 | 9..1075 | 4740 | 97 | Plus |
| rau-RA | 2215 | CG8965-RA | 512..1606 | 9..1075 | 4740 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860540..5861180 | 938..301 | 3055 | 99.5 | Minus |
| 2L | 23513712 | 2L | 5861425..5861607 | 191..9 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 5861252..5861367 | 301..186 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:33 has no hits.
UFO02073.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:21 Download gff for
UFO02073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 495..1556 | 9..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:12 Download gff for
UFO02073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 512..1573 | 9..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:40 Download gff for
UFO02073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 512..1573 | 9..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:40 Download gff for
UFO02073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5861425..5861607 | 9..191 | 100 | | Minus |
| 2L | 5860411..5861179 | 302..1047 | 96 | <- | Minus |
| 2L | 5861252..5861361 | 192..301 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:12 Download gff for
UFO02073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860411..5861179 | 302..1047 | 96 | <- | Minus |
| arm_2L | 5861252..5861361 | 192..301 | 100 | <- | Minus |
| arm_2L | 5861425..5861607 | 9..191 | 100 | | Minus |
