UFO02074.5prime Sequence
1126 bp (1019 high quality bases) assembled on 2008-12-15
> UFO02074.5prime
CAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCATTGAGATC
ACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGCTGCGACTG
GGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGCGGACCTGC
CGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAACCAAAGCCG
ACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGGGCCACCAA
GAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGACATCGCCC
CGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCGACATGTCG
AAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCCGGCGGCTC
AGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAAGAACTTCC
GGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAAACATCGCA
GAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGATCTGGCGG
TGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAATGACCACA
CGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACAAGCCGGTG
GTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGCGGTGAGCT
TCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGACTGTCATGC
GCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGGTCAATGTG
GATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCAGTTCCGCA
GACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGCCAATTTGG
TCACGGAAGCGCAACAGTTCCAGTGCCATTGTTCGCCCGGTGAGGCTGCA
AACCAGGAGGCTAGTGCCCGTGATGCCATTAACTTAATTCCGAGCACGTC
ACTACGCTGCAGATCGGCTAGCGACGTCGCGTCTAGCTGGCAGTTATCTT
TCGCACGTCTCGACTTCGTCGATCATACAACTGACGCCCCTCAGTACTCA
CTAGAATTCGATCTGGGTACCTGGTC
UFO02074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p47-RA | 1432 | CG11139-RA | 90..1199 | 9..1100 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7465778..7466207 | 755..326 | 2150 | 100 | Minus |
| 2R | 25286936 | 2R | 7466263..7466479 | 325..109 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 7465443..7465676 | 987..754 | 1060 | 98.7 | Minus |
| 2R | 25286936 | 2R | 7466569..7466670 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:44 has no hits.
UFO02074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:19 Download gff for
UFO02074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p47-RA | 54..1190 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:23 Download gff for
UFO02074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p47-RA | 82..1218 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:59 Download gff for
UFO02074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p47-RA | 82..1218 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:59 Download gff for
UFO02074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7466263..7466477 | 111..325 | 100 | <- | Minus |
| 2R | 7466569..7466678 | 1..110 | 96 | | Minus |
| 2R | 7465383..7465675 | 755..1039 | 95 | <- | Minus |
| 2R | 7465779..7466207 | 326..754 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:23 Download gff for
UFO02074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3352888..3353180 | 755..1039 | 95 | <- | Minus |
| arm_2R | 3353284..3353712 | 326..754 | 100 | <- | Minus |
| arm_2R | 3353768..3353982 | 111..325 | 100 | <- | Minus |
| arm_2R | 3354074..3354183 | 1..110 | 96 | | Minus |
