UFO02080.5prime Sequence
1118 bp (1017 high quality bases) assembled on 2008-12-15
> UFO02080.5prime
CAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGGCGGCCGCA
GTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTTTCCACGGC
CTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGGTTGGTTGG
AGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGGATTTTGGA
TGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAACCCATCGA
GAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGAGCGACGCG
CCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCAAGGATGAG
GAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCCAATAGCTG
TGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGAGAACAATC
TTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCAAAGGCATG
AGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAGCTGGCCTG
TGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCTAGAAAGGA
CGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGTTTCACTTC
GTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGATGGCTTGAA
ACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGATTGGACAG
ATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGACCGGCGAA
CAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGGCGGATTGC
CATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAATCGTGTCCG
GAACACTGCAGAAACTTCTAAAGGCCGACGAGCAGGCGAATCGGGGACGG
AGACTCACACGTCCGGATACACCCACCACATTATGAGCGAGCGCTTTCAC
CGCACGTGACCTGCATCGCTCTCAGAACTGACCAGAAAATAGCCATCATG
AGCAGCATCTGCTGACGAAACGATCGGAGCAGTGTTAAGTGGACGCCAGT
CGACGTACCCAAACATCG
UFO02080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| calypso-RA | 2147 | CG8445-RA | 359..1479 | 9..1111 | 5105 | 98.1 | Plus |
| calypso-RB | 2117 | CG8445-RB | 329..1449 | 9..1111 | 5105 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16194838..16195657 | 1015..202 | 3840 | 99 | Minus |
| 2R | 25286936 | 2R | 16195715..16195909 | 203..9 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:28 has no hits.
UFO02080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:15 Download gff for
UFO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8445-RB | 298..1426 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:06 Download gff for
UFO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1457 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:33 Download gff for
UFO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| calypso-RB | 329..1457 | 9..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:33 Download gff for
UFO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16194722..16195657 | 202..1118 | 97 | <- | Minus |
| 2R | 16195717..16195909 | 9..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:06 Download gff for
UFO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12083222..12083414 | 9..201 | 100 | | Minus |
| arm_2R | 12082227..12083162 | 202..1118 | 97 | <- | Minus |
