UFO02082.5prime Sequence
1106 bp (993 high quality bases) assembled on 2008-12-15
> UFO02082.5prime
CAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCACCCGCATG
AGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCCGCCGCCGG
ATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGGCGCCCACA
ACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCGTGTTTGTC
TGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCCTACTCGGC
GGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACTCACAGCAC
AGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGGATGTCCTT
GGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGACAAGGTGCT
GCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAAGTTGGCCC
GCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGGCAAAGATC
ATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCGGTGTCCGC
CTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCATGCCCGGAT
TCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGTCCCTCAAG
GATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGAGAGGCTGG
CGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAAGTGCGAGAGCTCTGCA
CCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAGGATTGGCC
AGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGTGCAGCCAGACATT
CTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGTGTCGGGGCT
CTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCGGGCGAGCACGGATC
CACCTACGGAGCAACCCCTGGCTGCCGAGTGTCATGCCGCCTTGAGTCTG
CAGAGAAAGCTGCGAGACGCTTCAAAATGGTGACTGCTGCCCACGAGCTG
TCACGCTGCCAAGATGTGGTTCGGTTGTCCGGAGTCTGCTCCACGCCATC
GTATTA
UFO02082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1501 | CG8782-RA | 90..1215 | 7..1102 | 4830 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19647791..19648426 | 961..328 | 3050 | 99.4 | Minus |
| 3L | 28110227 | 3L | 19649441..19649762 | 328..7 | 1610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:39 has no hits.
UFO02082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:32 Download gff for
UFO02082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 83..1044 | 1..961 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:12 Download gff for
UFO02082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 85..1046 | 1..961 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:38 Download gff for
UFO02082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 85..1046 | 1..961 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:38 Download gff for
UFO02082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19647791..19648425 | 329..961 | 99 | <- | Minus |
| 3L | 19649441..19649767 | 1..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:12 Download gff for
UFO02082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19640891..19641525 | 329..961 | 99 | <- | Minus |
| arm_3L | 19642541..19642867 | 1..328 | 99 | | Minus |
