UFO02083.5prime Sequence
1129 bp (1041 high quality bases) assembled on 2008-12-15
> UFO02083.5prime
CAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGCAGCGACTG
GGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTAATATCCGC
CCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGACAGTCAGT
CCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTGATGGAGCC
CGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACTTACCGATA
TAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCTTCATCCGG
CGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCGCCACACTT
ATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAGAAGACCGT
ACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGACCAATCGC
TGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCCGCGCCTCT
GCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCCACACGTGG
AAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTATATACCTGC
TGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTATATTCGGA
GCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTATCCGTTGCT
ATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGACACAAACTC
CCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAACAACTGTGC
CTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGGACCTTCTA
CACAATGTACGGTTGGGAATATATATATGAAGCGTACCTGTACCACTTCG
TACGCAAGGACCCGCGACACACTTCTCGCTGCAGTTCCTTCTACAGTACT
GGGCAGTGCGTCGAGTGTGCGACCTTCTGCGATCTGAGACTCTAGTGCTG
CTCGCAGTTCCTGCTCATTCTCTACTAAGCTGGAGCTCGTCAGTTCCGCC
AGAAGCTGCAATTCGCATCTTGCGTGCTTGTCATCGTCACTAACTCGATA
TAACCCCTCAGACTCATGGAACTTGCCAT
UFO02083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 812..1911 | 9..1090 | 5010 | 98 | Plus |
| CG42380-RB | 2320 | CG42380-RB | 873..1972 | 9..1090 | 5010 | 98 | Plus |
| CG42380-RA | 2259 | CG42380-RA | 812..1911 | 9..1090 | 5010 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21667921..21668988 | 1064..9 | 4750 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:22 has no hits.
UFO02083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:31 Download gff for
UFO02083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42379-RA | 947..2060 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:32 Download gff for
UFO02083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1921 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:03 Download gff for
UFO02083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1921 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:03 Download gff for
UFO02083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21667879..21668992 | 1..1097 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:32 Download gff for
UFO02083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555384..17556497 | 1..1097 | 97 | | Minus |
