UFO02084.5prime Sequence
1105 bp (986 high quality bases) assembled on 2008-12-15
> UFO02084.5prime
CAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAATCGCGGCT
TCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAGGGCACGAG
CAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAGAGGATCAT
TATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGCGCGCCATG
GGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAGGAGAATAG
CCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCATGCCGCCGC
AGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCTATTACCTG
CTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCCGCTTATCG
CGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCGACTACTGG
ACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCATCGGCGGG
CAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAGCCACGCCT
GGGCAAACGTGCTCAAGTGTGCGGTGGCGATGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGCAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCAGCGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGTGAAAACGGGGCGAAGAAGTTGTCAATATGCACGTTAAATCA
AAACTGTTGAACTCACCCAGGATGCTGAAAACGAAAAACATATTTCCTCA
TAACCGTTAGAAATAGCAGTTCACGTAACCGCCAATCTGCATATATTGTT
AACTG
UFO02084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hug-RA | 1033 | CG6371-RA | 169..741 | 9..581 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12527746..12528030 | 88..372 | 1425 | 100 | Plus |
| 3R | 32079331 | 3R | 12528576..12528784 | 373..581 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 12526356..12526440 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:53 has no hits.
UFO02084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:29 Download gff for
UFO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hug-RA | 164..741 | 1..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:19 Download gff for
UFO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hug-RA | 164..741 | 1..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:51 Download gff for
UFO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hug-RA | 164..741 | 1..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:51 Download gff for
UFO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12526351..12526439 | 1..92 | 95 | -> | Plus |
| 3R | 12527751..12528030 | 93..372 | 100 | -> | Plus |
| 3R | 12528576..12528784 | 373..581 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:19 Download gff for
UFO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8352073..8352161 | 1..92 | 95 | -> | Plus |
| arm_3R | 8353473..8353752 | 93..372 | 100 | -> | Plus |
| arm_3R | 8354298..8354506 | 373..581 | 100 | == | Plus |
