UFO02087.5prime Sequence
1103 bp (1011 high quality bases) assembled on 2008-12-15
> UFO02087.5prime
CAGTCGACATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGGTCATACTC
CATGGCGAACACGCCGTGGTCTATCATCGTCCCGCCCTCGCCGCCGTAGT
GGGTTTGGGCACTACTCTGAGATTTCGGCAGCTGGAGGACAGCCAGGTGG
CAAGTTTTCAACTGGAGGCCCTTAACTGCACACTGGAGATCCAGTTGCCG
GAGTTCAATGGATTTTTGGCTGAATTTAGGAGTAAATACCCATCAGATAG
CACGGCCAATCTGTTGGAAGCCGTCCGCGCAGAGGTGTCCAAACAACTTG
AACGATCCGGAGGCAATGCACCGAAGCAGCACACCCAGCGGGCATTCATC
TCCATATACTATTTGCTGGCCGGCGCTGTACTCTCCGCACCCGGCGACAA
GAAACTGACGCTGCAAACCGGTTTCCAGGTGCAGGTAGACAGCCAGCTAA
CCGTGGGTGCGGGTTTGGGCAGTTCCGCCTCTTTCGGAGCAGCTTTGGCC
ACGACATTTCTCATTTTGGCCGGACACTTTGATAGAGACAGCTACTTGTC
GGAGGCAAACCAGGCGTTGATCTCGTCCTGGGCTTATGAATCGGAGCGTG
TTAATCATGGCACGCCCTCGGGTCTGGACAACACTGTATGCACCTACGGC
GGAATGTTGCGGTATGTCAAGGGCCAGGGCTTCCAGTCGCTGAAGATCCA
GAAACCACTAAACATCCTGCTGGTGGACAGTCGTGTGAGTCGCAGCACCG
CCGACATTGTGGCCAAGGTTCGTCATCTGGGAGATGCCTTTCCGCAGCTC
ATCGAGGCCATTTGGCAGGCTTGCGAGGAGCTTGTTGCCCGCCGCCGTTC
CACTCTACGAAAGCTTTGGCAACGCCAAGACGATAGCTCGAAATTCGAGC
ACTTGAACGCCTGTTCCAGATCACATTGATCTGTTGAAGCTATCGGGTGT
CGCACCCGAAACTGGAGCAATTCTTCACCATCGCTTTTAGCGTGCTTCTT
TTCAAAGCTGAACGCGCGGCGCAGTGCTATGTCATCGTTCTGCTCAAAAC
TACGATTGCACGAGGCTACTGAGCCTAAAGACTCGATCGCGATTTGGGGT
TTC
UFO02087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33672-RA | 1976 | CG33672-RA | 716..1806 | 9..1081 | 4890 | 97.6 | Plus |
| CG33671-RB | 1517 | CG33671-RB | 257..1347 | 9..1081 | 4890 | 97.6 | Plus |
| CG33671-RA | 1976 | CG33671-RA | 716..1806 | 9..1081 | 4890 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12634418..12635426 | 1011..9 | 4620 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:05 has no hits.
UFO02087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:05 Download gff for
UFO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 736..1796 | 9..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:43 Download gff for
UFO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33672-RA | 716..1776 | 9..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:44 Download gff for
UFO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33671-RA | 716..1776 | 9..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:44 Download gff for
UFO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12634366..12635426 | 9..1055 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:43 Download gff for
UFO02087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8521871..8522931 | 9..1055 | 98 | | Minus |
