UFO02088.5prime Sequence
1088 bp (992 high quality bases) assembled on 2008-12-15
> UFO02088.5prime
CAGTCGACATGGGGCTTCCTCCATTCAATGTCAGCGGCAGCCCGTTCAAT
GTGGTTCCCATTCACAACTACCCGGAGCTTATGAAAGACACTTGCGCCCT
AATCAACGCAGAGTGGCCACGATCGGAAACGGCGCGCATGCGCTCCCTGG
AGGCCTCCTGTGACAGCCTACCCTGCAGCCTGGTGCTGACCACCGAGGGA
ATGTGCCGCGTGATCGCTCACCTCAAGCTCAGCCCGATCAATTCCAAGAA
GAAGGCCTGCTTCGTCGAGTCCGTGGTGGTGGACAAGCGGCACCGTGGCC
AGGGATTCGGCAAGCTGATCATGAAGTTCGCCGAGGACTATTGCCGCGTC
GTGCTGGACCTCAAGACCATATATCTGTCCACCATCGACCAGGATGGATT
CTACGAACGCATTGGCTACGAGTACTGCGCTCCCATTACAATGTATGGGC
CGCGCCACTGTGAGCTGCCCAGCTTGCAAAATGCCAAAAAGAAATACATG
AAGAAGGTCTTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAACTC
ACCCAGGATTGCTGAGACGAAAACATATCTCAATAACCCTTTAGAATAGC
AGTTTTCACGGTACCGCCACATCTGCAATATATGTGTAGACCTGCGGATC
GTCTGTATCACTCCGAGCGATAAACGTTCAGTTGCTAT
UFO02088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-RA | 1412 | CG8481-RA | 305..808 | 9..512 | 2520 | 100 | Plus |
| CG8481-RB | 1506 | CG8481-RB | 402..902 | 12..512 | 2505 | 100 | Plus |
| MED6-RB | 1758 | CG9473-RB | 1..63 | 73..11 | 315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9768922..9769423 | 11..512 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:57:00 has no hits.
UFO02088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:03 Download gff for
UFO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 280..791 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:26 Download gff for
UFO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 297..808 | 1..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:34 Download gff for
UFO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 297..808 | 1..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:34 Download gff for
UFO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9768913..9769423 | 1..512 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:26 Download gff for
UFO02088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5594635..5595145 | 1..512 | 99 | == | Plus |
