UFO02093.5prime Sequence
1100 bp (1003 high quality bases) assembled on 2008-12-15
> UFO02093.5prime
CAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAAATGTTTTC
TCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCCAACCTGGC
CTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGATCAACGAAT
CCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAACGCCTCTCC
CAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTGACCGTCCT
GGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCTGGTGGCCC
AGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCAAGAACGAT
CCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAAATCTGGGC
GGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCAGATGTACA
TGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATCTGGATGCC
ATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATGCCCCCTCA
GCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACATGGCTGCCG
CTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAGGTCCTTTG
CATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTGGAGATCGT
TAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCTGAAGCCCG
GCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCACCTCGACC
TGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGTGTCCAGGA
CGACGAGCTCACGCGGAGTTCCTGCGCATCAATGACGAGCTGAACAATGT
GTTCTTGCGCCACCAGCGTTACGAGAAAAATCGTTCGCAGGCCAGGGTGC
TGTGTAACCTCGCCCTCGCTGTGCTGGCGCAGCATGGGCCTGCCCGGTGT
GGGAGCAGCTGGACAGACCACACGTGCTACCCTACCACCTCGCCACAACT
ACGCCGTGAGCAATACGCCGCAAGGGACACTGCTGATCGATCTATCGAAG
UFO02093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3529-RD | 2111 | CG3529-RD | 133..1242 | 9..1099 | 5040 | 98 | Plus |
| CG3529-RC | 2069 | CG3529-RC | 133..1242 | 9..1099 | 5040 | 98 | Plus |
| CG3529-RB | 2120 | CG3529-RB | 133..1242 | 9..1099 | 5040 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9448386..9448839 | 74..527 | 2270 | 100 | Plus |
| 3L | 28110227 | 3L | 9448900..9449392 | 527..1013 | 2150 | 98.6 | Plus |
| 3L | 28110227 | 3L | 9446996..9447062 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:13 has no hits.
UFO02093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:22 Download gff for
UFO02093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 115..1231 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:01 Download gff for
UFO02093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..1242 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:48 Download gff for
UFO02093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3529-RB | 126..1242 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:48 Download gff for
UFO02093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9446989..9447062 | 1..75 | 94 | -> | Plus |
| 3L | 9448388..9448839 | 76..527 | 100 | -> | Plus |
| 3L | 9448901..9449491 | 528..1100 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:01 Download gff for
UFO02093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9440089..9440162 | 1..75 | 94 | -> | Plus |
| arm_3L | 9441488..9441939 | 76..527 | 100 | -> | Plus |
| arm_3L | 9442001..9442591 | 528..1100 | 96 | | Plus |
