UFO02094.5prime Sequence
1077 bp (995 high quality bases) assembled on 2008-12-15
> UFO02094.5prime
CAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGAACGGAACA
ACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAGGATGCCAA
GGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAAATTGCCCG
TGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCAAAGTAAAA
GGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAGGATTGTGT
GACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACTGGACCGAC
CCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATAAGCTTGAG
GTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTACAACCAGGC
CAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCGCGTCGTCA
AGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGGATCTCGCC
TGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGTCTGGCTGT
CAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCTTGAATACT
ACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATGATAAACAA
AATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATGCCAGTTCC
CGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGGACGGCTAT
CCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGACAGATCAAG
CAGGTCCAGAAGGCAACATCAACGACTATCTGAGCTCCCTGATAGCCGCC
CTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGATGGGCACGAA
TGTGAGCAGTCTGGTGCAGCAGCAGTGACGCCTGTTCGCCATTGAACACA
CTAGCACCACTACACCACTACACCAGCTCACAGCAACAACAGCCCGTTGT
TGCCTTGCAATGTGTAAGCCAACGGCGCGCGGGGTCGTCTCAGCAGCTTC
TAGACATTCGGTGGGCGCCGCAGGTAA
UFO02094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-2-RA | 2148 | CG9057-RA | 280..1292 | 8..1008 | 4775 | 98.8 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 8..691 | 3420 | 100 | Plus |
| Lsd-2-RF | 4598 | CG9057-RF | 1145..1474 | 691..1008 | 1360 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15073933..15074376 | 643..200 | 2205 | 99.8 | Minus |
| X | 23542271 | X | 15072393..15072648 | 943..691 | 1130 | 98.8 | Minus |
| X | 23542271 | X | 15075747..15075941 | 202..8 | 975 | 100 | Minus |
| X | 23542271 | X | 15073341..15073392 | 690..639 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:15 has no hits.
UFO02094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:13 Download gff for
UFO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 256..1288 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:05 Download gff for
UFO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1305 | 1..1022 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:29 Download gff for
UFO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-2-RA | 273..1305 | 1..1022 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:29 Download gff for
UFO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15072314..15072648 | 691..1010 | 95 | <- | Minus |
| X | 15073341..15073391 | 640..690 | 100 | <- | Minus |
| X | 15073937..15074374 | 202..639 | 100 | <- | Minus |
| X | 15075748..15075946 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:05 Download gff for
UFO02094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14966347..14966681 | 691..1010 | 95 | <- | Minus |
| arm_X | 14967374..14967424 | 640..690 | 100 | <- | Minus |
| arm_X | 14967970..14968407 | 202..639 | 100 | <- | Minus |
| arm_X | 14969781..14969979 | 1..201 | 98 | | Minus |
