UFO02095.5prime Sequence
1114 bp (997 high quality bases) assembled on 2008-12-15
> UFO02095.5prime
CAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCGCGCCACAT
GCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCA
AAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACC
ACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTC
GGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAA
TGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACG
ATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTT
AACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAA
CTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCG
ACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATC
AAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCT
GCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGC
TGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCG
TGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACT
GCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGG
GCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGAC
CATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGT
CAATGGCACCAACTTCCACGACAGCAACGGTGAGACGACAGCGCTTCAGC
AAGCTTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGTGGTCA
TTATCATATTCATAATCATAATCATAATCCACAACTAGCCTAGGAGATTC
TGGTCATTGACTGTGCTTGGATTCTCTCACCAATAAAAACGCCCGGCGCA
ACGAGCGTTCTGACCAATCGAATTGGAGTTCTGAGTCATTACTTGGATCT
ATCCACGGATCAGC
UFO02095.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pop2-RA | 1688 | CG5684-RA | 322..1212 | 9..898 | 4430 | 99.9 | Plus |
| Pop2-RB | 1893 | CG5684-RB | 536..1417 | 18..898 | 4385 | 99.9 | Plus |
| Pop2-RC | 1827 | CG5684-RC | 470..1351 | 18..898 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12000273..12000692 | 776..357 | 2100 | 100 | Minus |
| 3L | 28110227 | 3L | 12000750..12001091 | 358..17 | 1710 | 100 | Minus |
| 3L | 28110227 | 3L | 11998874..11998998 | 898..775 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:05 has no hits.
UFO02095.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:18:12 Download gff for
UFO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 320..1210 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:55 Download gff for
UFO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1212 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:45 Download gff for
UFO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pop2-RA | 322..1212 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:45 Download gff for
UFO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11998874..11998996 | 777..898 | 99 | <- | Minus |
| 3L | 12000273..12000690 | 359..776 | 100 | <- | Minus |
| 3L | 12000750..12001091 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:55 Download gff for
UFO02095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11991974..11992096 | 777..898 | 99 | <- | Minus |
| arm_3L | 11993373..11993790 | 359..776 | 100 | <- | Minus |
| arm_3L | 11993850..11994191 | 17..358 | 100 | | Minus |
