UFO02107.5prime Sequence
1099 bp (1004 high quality bases) assembled on 2008-12-21
> UFO02107.5prime
CAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCCTACTGGCC
GTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAGGTGGTACC
CGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCACGTACAGCA
ACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCCAGGTTAAG
GATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTCTACACGCT
CATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAAGTTCCGCG
AGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACTTGGCAAGT
GGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAGGGCACGGG
TCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAAACTTGAGT
TCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCCCCAAATTC
AGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCCATTGCTGG
AACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACTGCACAAGC
AACTTTCGGAGAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTC
TGCCGACATGTAGCCATCACAAACGGCATGATGACCTGATCGCAGCGCAT
CAGCACTGTCGCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAGAGT
TGTCCATATGCCACGTTATTCAACTGTGACTCACCAGGGATGCTGAAACG
AAAAACTATTCTCATATCGTAGAATGGCAAGGTTCACCGGTAACGCACT
UFO02107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17919-RA | 778 | CG17919-RA | 93..698 | 9..614 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6344528..6345007 | 135..614 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 6344121..6344251 | 9..139 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 22466273..22466447 | 260..434 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:07 has no hits.
UFO02107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:08 Download gff for
UFO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17919-RA | 91..696 | 9..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:25 Download gff for
UFO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17919-RA | 93..698 | 9..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:19 Download gff for
UFO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17919-RA | 93..698 | 9..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:19 Download gff for
UFO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6344121..6344249 | 9..137 | 100 | -> | Plus |
| 3R | 6344531..6345007 | 138..614 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:25 Download gff for
UFO02107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2169843..2169971 | 9..137 | 100 | -> | Plus |
| arm_3R | 2170253..2170729 | 138..614 | 100 | == | Plus |
